Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30216 | 5' | -61.4 | NC_006273.1 | + | 134477 | 0.66 | 0.771256 |
Target: 5'- ---aGCGCGG-CGCCGCCUCGUcgGGUa -3' miRNA: 3'- ccucCGCGUCgGUGGCGGAGUA--CCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 31938 | 0.66 | 0.771256 |
Target: 5'- cGGcGGCaGCAGuagcucCCAaCGCCUCGUaGGCGa -3' miRNA: 3'- -CCuCCG-CGUC------GGUgGCGGAGUA-CCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 114530 | 0.66 | 0.771256 |
Target: 5'- cGGcGGGCGUuaugacacGCgGCCGCCUUAaGGCc -3' miRNA: 3'- -CC-UCCGCGu-------CGgUGGCGGAGUaCCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 87393 | 0.66 | 0.765948 |
Target: 5'- --cGGCGCAaccuccuccaccaccGCCGCCGCCggcuccuccgccUCG-GGCGa -3' miRNA: 3'- ccuCCGCGU---------------CGGUGGCGG------------AGUaCCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 196554 | 0.66 | 0.762388 |
Target: 5'- ---cGCGCGacGCUGCUGCCUCAgccGGCGc -3' miRNA: 3'- ccucCGCGU--CGGUGGCGGAGUa--CCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 1661 | 0.66 | 0.762388 |
Target: 5'- ---cGCGCGacGCUGCUGCCUCAgccGGCGc -3' miRNA: 3'- ccucCGCGU--CGGUGGCGGAGUa--CCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 147424 | 0.66 | 0.762388 |
Target: 5'- --cGGCGCGGCguCCGgCgUCggggGUGGCGg -3' miRNA: 3'- ccuCCGCGUCGguGGC-GgAG----UACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 167658 | 0.66 | 0.762388 |
Target: 5'- cGGcGGCGCaacggcggggucGGCCGCCGUUcgucgUCAcggGGCGg -3' miRNA: 3'- -CCuCCGCG------------UCGGUGGCGG-----AGUa--CCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 118262 | 0.66 | 0.762388 |
Target: 5'- cGGAGGUGCcaagguagcugAGCgCGCUcagGCCggCGUGGUGa -3' miRNA: 3'- -CCUCCGCG-----------UCG-GUGG---CGGa-GUACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 104235 | 0.66 | 0.762388 |
Target: 5'- ---cGCGCAccucGCCGCCGUgUUcgGGCGa -3' miRNA: 3'- ccucCGCGU----CGGUGGCGgAGuaCCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 173196 | 0.66 | 0.759708 |
Target: 5'- --cGGCGCgacaauugacguagGGCCG-CGCCUCcGUGGCa -3' miRNA: 3'- ccuCCGCG--------------UCGGUgGCGGAG-UACCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 129538 | 0.66 | 0.753419 |
Target: 5'- --cGGCGCugcGCCgcGCCGCCUC--GGCu -3' miRNA: 3'- ccuCCGCGu--CGG--UGGCGGAGuaCCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 27174 | 0.66 | 0.753419 |
Target: 5'- aGAGGCGCcGCa--CGCUgCAUGGCu -3' miRNA: 3'- cCUCCGCGuCGgugGCGGaGUACCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 154208 | 0.66 | 0.752516 |
Target: 5'- aGGAGGagcaCGUGGCCuacguggACCGCUUCGUG-CGg -3' miRNA: 3'- -CCUCC----GCGUCGG-------UGGCGGAGUACcGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 134210 | 0.67 | 0.747083 |
Target: 5'- cGGuAGGCGCcuacGGCCGCCacgcccgugcccgagGCCUUgcgguugGUGGUGa -3' miRNA: 3'- -CC-UCCGCG----UCGGUGG---------------CGGAG-------UACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 179175 | 0.67 | 0.744355 |
Target: 5'- aGGcGGCGCAG-CGCCaGCCUUAgcuuucuugacUGGCc -3' miRNA: 3'- -CCuCCGCGUCgGUGG-CGGAGU-----------ACCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 157035 | 0.67 | 0.744355 |
Target: 5'- -aGGGCGCGGaaaCCACCGUCggcCGUGuGCa -3' miRNA: 3'- ccUCCGCGUC---GGUGGCGGa--GUAC-CGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 86613 | 0.67 | 0.744355 |
Target: 5'- --cGGCGCcGCCGCCGgCCUC--GGUa -3' miRNA: 3'- ccuCCGCGuCGGUGGC-GGAGuaCCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 72912 | 0.67 | 0.744355 |
Target: 5'- aGGAGGgagGCGGCCGCCGCUccuUCugccGGUu -3' miRNA: 3'- -CCUCCg--CGUCGGUGGCGG---AGua--CCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 191479 | 0.67 | 0.743444 |
Target: 5'- uGGAagucGGCGCcGCCGCCGCUuggaccuUCGUG-CGu -3' miRNA: 3'- -CCU----CCGCGuCGGUGGCGG-------AGUACcGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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