miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30216 5' -61.4 NC_006273.1 + 36 0.68 0.688422
Target:  5'- cGGGGGCGCGGCgGggugggugugUGCCgggUGUGGCGg -3'
miRNA:   3'- -CCUCCGCGUCGgUg---------GCGGa--GUACCGC- -5'
30216 5' -61.4 NC_006273.1 + 776 0.71 0.508305
Target:  5'- --cGGCGCuuuguGCgCACUGCCguugCGUGGCGu -3'
miRNA:   3'- ccuCCGCGu----CG-GUGGCGGa---GUACCGC- -5'
30216 5' -61.4 NC_006273.1 + 870 0.67 0.735205
Target:  5'- cGGAGGUguccgGCGGCCAUgGCC-CAgcgcaacGGCa -3'
miRNA:   3'- -CCUCCG-----CGUCGGUGgCGGaGUa------CCGc -5'
30216 5' -61.4 NC_006273.1 + 1614 0.67 0.716675
Target:  5'- aGGuGGUGCGGCUguACCGCUgcaacCGgcugGGCGu -3'
miRNA:   3'- -CCuCCGCGUCGG--UGGCGGa----GUa---CCGC- -5'
30216 5' -61.4 NC_006273.1 + 1661 0.66 0.762388
Target:  5'- ---cGCGCGacGCUGCUGCCUCAgccGGCGc -3'
miRNA:   3'- ccucCGCGU--CGGUGGCGGAGUa--CCGC- -5'
30216 5' -61.4 NC_006273.1 + 2393 0.67 0.696946
Target:  5'- uGGGGCGCGagucggcGcCCGCCGCCgaggccgCGcGGCGg -3'
miRNA:   3'- cCUCCGCGU-------C-GGUGGCGGa------GUaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 3656 0.7 0.573578
Target:  5'- cGAGGUGgGGCCACUGCgaUCAgcGGCa -3'
miRNA:   3'- cCUCCGCgUCGGUGGCGg-AGUa-CCGc -5'
30216 5' -61.4 NC_006273.1 + 17381 0.66 0.771256
Target:  5'- aGGAGGggaagaCGCGGUUGCCGCgCgUAUGGCc -3'
miRNA:   3'- -CCUCC------GCGUCGGUGGCG-GaGUACCGc -5'
30216 5' -61.4 NC_006273.1 + 21210 0.73 0.404811
Target:  5'- gGGGGGUGgcCGGCUGCCGCCgcuGUGGCu -3'
miRNA:   3'- -CCUCCGC--GUCGGUGGCGGag-UACCGc -5'
30216 5' -61.4 NC_006273.1 + 21350 0.67 0.69789
Target:  5'- -cGGGCucaccGCAGUUGCUGCCUUAcGGCGa -3'
miRNA:   3'- ccUCCG-----CGUCGGUGGCGGAGUaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 26653 0.71 0.471545
Target:  5'- --cGGCGUGGCuugggaaCACCGCCUCAgcucugugUGGCGu -3'
miRNA:   3'- ccuCCGCGUCG-------GUGGCGGAGU--------ACCGC- -5'
30216 5' -61.4 NC_006273.1 + 27128 0.7 0.526673
Target:  5'- -cGGGCGCA-UCAcCCGCCUCAUGGa- -3'
miRNA:   3'- ccUCCGCGUcGGU-GGCGGAGUACCgc -5'
30216 5' -61.4 NC_006273.1 + 27174 0.66 0.753419
Target:  5'- aGAGGCGCcGCa--CGCUgCAUGGCu -3'
miRNA:   3'- cCUCCGCGuCGgugGCGGaGUACCGc -5'
30216 5' -61.4 NC_006273.1 + 31464 0.68 0.640604
Target:  5'- uGAGGCGguGgCugCGCCUCcucgucGGCc -3'
miRNA:   3'- cCUCCGCguCgGugGCGGAGua----CCGc -5'
30216 5' -61.4 NC_006273.1 + 31938 0.66 0.771256
Target:  5'- cGGcGGCaGCAGuagcucCCAaCGCCUCGUaGGCGa -3'
miRNA:   3'- -CCuCCG-CGUC------GGUgGCGGAGUA-CCGC- -5'
30216 5' -61.4 NC_006273.1 + 33134 0.67 0.69789
Target:  5'- ---cGCGCcGCCGCgGCUUCAugUGGCGu -3'
miRNA:   3'- ccucCGCGuCGGUGgCGGAGU--ACCGC- -5'
30216 5' -61.4 NC_006273.1 + 33401 0.74 0.329408
Target:  5'- -uAGGCGCuggacGCgCACCGCCUCG-GGCGu -3'
miRNA:   3'- ccUCCGCGu----CG-GUGGCGGAGUaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 34882 0.71 0.517457
Target:  5'- -uAGGCGCucGUCACCGUCgUCAUGGUc -3'
miRNA:   3'- ccUCCGCGu-CGGUGGCGG-AGUACCGc -5'
30216 5' -61.4 NC_006273.1 + 37138 0.69 0.602199
Target:  5'- cGGAGGUGCuGGCgGCCgugGCCU-GUGGCc -3'
miRNA:   3'- -CCUCCGCG-UCGgUGG---CGGAgUACCGc -5'
30216 5' -61.4 NC_006273.1 + 38075 0.74 0.329408
Target:  5'- -cGGGCaGCAGCCGCCgcgcgGCCUCGgcGGCGg -3'
miRNA:   3'- ccUCCG-CGUCGGUGG-----CGGAGUa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.