miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30216 5' -61.4 NC_006273.1 + 188102 0.7 0.545285
Target:  5'- cGAaGCGaCAGCCGCUGCCguaguaCAUGGCc -3'
miRNA:   3'- cCUcCGC-GUCGGUGGCGGa-----GUACCGc -5'
30216 5' -61.4 NC_006273.1 + 184254 0.72 0.446376
Target:  5'- cGGuAGGCGUcgauAGCCcucACCGCCUCGUcguccccuucccGGCGu -3'
miRNA:   3'- -CC-UCCGCG----UCGG---UGGCGGAGUA------------CCGC- -5'
30216 5' -61.4 NC_006273.1 + 234490 0.72 0.453245
Target:  5'- gGGGGGCGCGGCgACaUGCCguugcgcugggcCAUGGCc -3'
miRNA:   3'- -CCUCCGCGUCGgUG-GCGGa-----------GUACCGc -5'
30216 5' -61.4 NC_006273.1 + 122252 0.71 0.48128
Target:  5'- --cGGCGCgcccucugcGGCCGCCGCCUUAcauaGGCa -3'
miRNA:   3'- ccuCCGCG---------UCGGUGGCGGAGUa---CCGc -5'
30216 5' -61.4 NC_006273.1 + 75265 0.71 0.490213
Target:  5'- uGGccGcCGCGGCgGCCGCCUCAUaccaGGUGa -3'
miRNA:   3'- -CCucC-GCGUCGgUGGCGGAGUA----CCGC- -5'
30216 5' -61.4 NC_006273.1 + 776 0.71 0.508305
Target:  5'- --cGGCGCuuuguGCgCACUGCCguugCGUGGCGu -3'
miRNA:   3'- ccuCCGCGu----CG-GUGGCGGa---GUACCGC- -5'
30216 5' -61.4 NC_006273.1 + 34882 0.71 0.517457
Target:  5'- -uAGGCGCucGUCACCGUCgUCAUGGUc -3'
miRNA:   3'- ccUCCGCGu-CGGUGGCGG-AGUACCGc -5'
30216 5' -61.4 NC_006273.1 + 213974 0.71 0.517457
Target:  5'- cGGAGGCGCgcAGCCAUaccgccaGCCUCucuaGGUa -3'
miRNA:   3'- -CCUCCGCG--UCGGUGg------CGGAGua--CCGc -5'
30216 5' -61.4 NC_006273.1 + 139234 0.7 0.535951
Target:  5'- aGGAGGCGC-GCUGCU-CCUCGgagcacgGGCGa -3'
miRNA:   3'- -CCUCCGCGuCGGUGGcGGAGUa------CCGC- -5'
30216 5' -61.4 NC_006273.1 + 62183 0.72 0.437871
Target:  5'- cGGAGGCGCGGCCcuacgucaAUUGUCgcgcCGUGGCc -3'
miRNA:   3'- -CCUCCGCGUCGG--------UGGCGGa---GUACCGc -5'
30216 5' -61.4 NC_006273.1 + 171348 0.72 0.42946
Target:  5'- aGGAGGcCGC-GCCACCaaaaccgccgcGCC-CAUGGUGg -3'
miRNA:   3'- -CCUCC-GCGuCGGUGG-----------CGGaGUACCGC- -5'
30216 5' -61.4 NC_006273.1 + 21210 0.73 0.404811
Target:  5'- gGGGGGUGgcCGGCUGCCGCCgcuGUGGCu -3'
miRNA:   3'- -CCUCCGC--GUCGGUGGCGGag-UACCGc -5'
30216 5' -61.4 NC_006273.1 + 163915 0.8 0.141023
Target:  5'- aGGAGGCuGCGaucGCCGCCGCCUCGaucgcGGCGu -3'
miRNA:   3'- -CCUCCG-CGU---CGGUGGCGGAGUa----CCGC- -5'
30216 5' -61.4 NC_006273.1 + 120930 0.77 0.236664
Target:  5'- uGGAGGCGCucgccauggcGCCGCCGCCggugacgCggGGCGu -3'
miRNA:   3'- -CCUCCGCGu---------CGGUGGCGGa------GuaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 33401 0.74 0.329408
Target:  5'- -uAGGCGCuggacGCgCACCGCCUCG-GGCGu -3'
miRNA:   3'- ccUCCGCGu----CG-GUGGCGGAGUaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 54212 0.74 0.329408
Target:  5'- cGGAGGCGguGCCACaGgCUguUGGCc -3'
miRNA:   3'- -CCUCCGCguCGGUGgCgGAguACCGc -5'
30216 5' -61.4 NC_006273.1 + 232968 0.74 0.329408
Target:  5'- -cGGGCaGCAGCCGCCgcgcgGCCUCGgcGGCGg -3'
miRNA:   3'- ccUCCG-CGUCGGUGG-----CGGAGUa-CCGC- -5'
30216 5' -61.4 NC_006273.1 + 96045 0.74 0.357539
Target:  5'- aGGAGGggcgaguCGCGGgCACCGCCUCGguacccccUGGCc -3'
miRNA:   3'- -CCUCC-------GCGUCgGUGGCGGAGU--------ACCGc -5'
30216 5' -61.4 NC_006273.1 + 134018 0.73 0.380297
Target:  5'- aGGcAGGCGaugcgcaCGGCCGCCGCCUgGuUGGUGu -3'
miRNA:   3'- -CC-UCCGC-------GUCGGUGGCGGAgU-ACCGC- -5'
30216 5' -61.4 NC_006273.1 + 220723 0.73 0.396795
Target:  5'- --cGGgGUAGCCACCauGCCaUCAUGGUGa -3'
miRNA:   3'- ccuCCgCGUCGGUGG--CGG-AGUACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.