miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30217 5' -60.9 NC_006273.1 + 81600 0.66 0.835415
Target:  5'- cGGCGGCC---GCGGCCgcggcGGAgGCCGa -3'
miRNA:   3'- -CCGUUGGuccCGUCGGa----CCUgCGGCc -5'
30217 5' -60.9 NC_006273.1 + 178835 0.66 0.835415
Target:  5'- cGCGACCAGGGCcaggaauguuGCgCgaaggGGACcccgcgggGCCGGc -3'
miRNA:   3'- cCGUUGGUCCCGu---------CG-Ga----CCUG--------CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 189517 0.66 0.835415
Target:  5'- uGGCcagGACCAGGGaAGCCaguccGGuacCGCCGa -3'
miRNA:   3'- -CCG---UUGGUCCCgUCGGa----CCu--GCGGCc -5'
30217 5' -60.9 NC_006273.1 + 189074 0.66 0.835415
Target:  5'- aGGCGGCCGcuucuugcgcccGGGCGGCggaGGugGCUuccaGGa -3'
miRNA:   3'- -CCGUUGGU------------CCCGUCGga-CCugCGG----CC- -5'
30217 5' -60.9 NC_006273.1 + 98687 0.66 0.8276
Target:  5'- aGCAACCGcGGCGGCg-GcGACcgGCCGGu -3'
miRNA:   3'- cCGUUGGUcCCGUCGgaC-CUG--CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 166981 0.66 0.8276
Target:  5'- uGCAACuugagCAGGGCacucuugagGGCCUGGAaagcguUGCCGc -3'
miRNA:   3'- cCGUUG-----GUCCCG---------UCGGACCU------GCGGCc -5'
30217 5' -60.9 NC_006273.1 + 193450 0.66 0.8276
Target:  5'- --aAACCGGGaacuaGCGGCaaGGGCGCCGc -3'
miRNA:   3'- ccgUUGGUCC-----CGUCGgaCCUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 202718 0.66 0.8276
Target:  5'- cGGCAACCGcucGGGCcuGCgacGcGACGCCGa -3'
miRNA:   3'- -CCGUUGGU---CCCGu-CGga-C-CUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 35351 0.66 0.824429
Target:  5'- aGGCGcCCGGuaGGuCAGCaugucugauaccGGGCGCCGGg -3'
miRNA:   3'- -CCGUuGGUC--CC-GUCGga----------CCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 206654 0.66 0.819628
Target:  5'- uGU-ACCuGGGC-GCCUcGGGCGCCa- -3'
miRNA:   3'- cCGuUGGuCCCGuCGGA-CCUGCGGcc -5'
30217 5' -60.9 NC_006273.1 + 187296 0.66 0.819628
Target:  5'- cGGCGucguuGCCGGGGCGGCUgcuccaGGuccgcggagcuaAUGCCGu -3'
miRNA:   3'- -CCGU-----UGGUCCCGUCGGa-----CC------------UGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 188574 0.66 0.819628
Target:  5'- cGGCGcCCAGGuGCAcGCUgauguccucgGGcuuaACGCCGGu -3'
miRNA:   3'- -CCGUuGGUCC-CGU-CGGa---------CC----UGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 150552 0.66 0.819628
Target:  5'- cGCGGCCGucucGGguGCCUucaGGGaGCCGGa -3'
miRNA:   3'- cCGUUGGUc---CCguCGGA---CCUgCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 231743 0.66 0.819628
Target:  5'- uGGCcccACCucGGCAuGCC-GG-CGCCGGg -3'
miRNA:   3'- -CCGu--UGGucCCGU-CGGaCCuGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 103549 0.66 0.819628
Target:  5'- cGGCcagccCCAGGccguGCGGgCUGGuCGCCGa -3'
miRNA:   3'- -CCGuu---GGUCC----CGUCgGACCuGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 143411 0.66 0.819628
Target:  5'- aGCAcGCCGGcGCGGCCUGccgcGCGuuGGa -3'
miRNA:   3'- cCGU-UGGUCcCGUCGGACc---UGCggCC- -5'
30217 5' -60.9 NC_006273.1 + 213646 0.66 0.818822
Target:  5'- aGGCAgcugagaucuaccGCCAGGGCgagaagAGCC---GCGCCGa -3'
miRNA:   3'- -CCGU-------------UGGUCCCG------UCGGaccUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 210643 0.66 0.814773
Target:  5'- aGGCAcacgugacaccuagcGCCGGGauguGC-GCCaGGAgGCCGGc -3'
miRNA:   3'- -CCGU---------------UGGUCC----CGuCGGaCCUgCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 68011 0.66 0.811507
Target:  5'- cGGCGGCgucauGGGUGGCggaGGACuGCCGGc -3'
miRNA:   3'- -CCGUUGgu---CCCGUCGga-CCUG-CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 178960 0.66 0.811507
Target:  5'- cGGCuagAGCguGGGCcgcguGCCUGGgaacguGCGCaCGGc -3'
miRNA:   3'- -CCG---UUGguCCCGu----CGGACC------UGCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.