miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30217 5' -60.9 NC_006273.1 + 116397 0.66 0.786315
Target:  5'- aGCAGCagucGCAGgCUGuGGCGCCGGu -3'
miRNA:   3'- cCGUUGguccCGUCgGAC-CUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 234672 0.66 0.786315
Target:  5'- uGGCGccGCCuuGGGGCcgugcAGUCUGGAagGCCGu -3'
miRNA:   3'- -CCGU--UGG--UCCCG-----UCGGACCUg-CGGCc -5'
30217 5' -60.9 NC_006273.1 + 188897 0.66 0.811507
Target:  5'- cGGCGuuuUCGGGaagGGCCUGGGCGucaCCGGc -3'
miRNA:   3'- -CCGUu--GGUCCcg-UCGGACCUGC---GGCC- -5'
30217 5' -60.9 NC_006273.1 + 117221 0.66 0.786315
Target:  5'- aGGCcGCCAcgccGGCGGCUgGGGCGCgCGu -3'
miRNA:   3'- -CCGuUGGUc---CCGUCGGaCCUGCG-GCc -5'
30217 5' -60.9 NC_006273.1 + 112241 0.66 0.786315
Target:  5'- cGCGGCgGGGGCuggcGCgaGGACGugcucauggaCCGGg -3'
miRNA:   3'- cCGUUGgUCCCGu---CGgaCCUGC----------GGCC- -5'
30217 5' -60.9 NC_006273.1 + 210643 0.66 0.814773
Target:  5'- aGGCAcacgugacaccuagcGCCGGGauguGC-GCCaGGAgGCCGGc -3'
miRNA:   3'- -CCGU---------------UGGUCC----CGuCGGaCCUgCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 34537 0.66 0.811507
Target:  5'- gGGCGGCaAGGGCAcGCCUcGAaGCgCGGc -3'
miRNA:   3'- -CCGUUGgUCCCGU-CGGAcCUgCG-GCC- -5'
30217 5' -60.9 NC_006273.1 + 101751 0.66 0.811507
Target:  5'- cGGCggUCGccGGCGGCaUGGGCGCguCGGg -3'
miRNA:   3'- -CCGuuGGUc-CCGUCGgACCUGCG--GCC- -5'
30217 5' -60.9 NC_006273.1 + 94090 0.66 0.786315
Target:  5'- cGGUAuuuuuCCAcuGGGCGGCCgcaccuagGGAgcgcgagccccgUGCCGGg -3'
miRNA:   3'- -CCGUu----GGU--CCCGUCGGa-------CCU------------GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 213646 0.66 0.818822
Target:  5'- aGGCAgcugagaucuaccGCCAGGGCgagaagAGCC---GCGCCGa -3'
miRNA:   3'- -CCGU-------------UGGUCCCG------UCGGaccUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 158768 0.66 0.811507
Target:  5'- aGGCcGCCGGccGCGGCCacGGACGCguagCGGu -3'
miRNA:   3'- -CCGuUGGUCc-CGUCGGa-CCUGCG----GCC- -5'
30217 5' -60.9 NC_006273.1 + 46798 0.66 0.783732
Target:  5'- cGGCGuuaagcccgaggacAUCAGcGuGCA-CCUGGGCGCCGa -3'
miRNA:   3'- -CCGU--------------UGGUC-C-CGUcGGACCUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 81600 0.66 0.835415
Target:  5'- cGGCGGCC---GCGGCCgcggcGGAgGCCGa -3'
miRNA:   3'- -CCGUUGGuccCGUCGGa----CCUgCGGCc -5'
30217 5' -60.9 NC_006273.1 + 166981 0.66 0.8276
Target:  5'- uGCAACuugagCAGGGCacucuugagGGCCUGGAaagcguUGCCGc -3'
miRNA:   3'- cCGUUG-----GUCCCG---------UCGGACCU------GCGGCc -5'
30217 5' -60.9 NC_006273.1 + 98687 0.66 0.8276
Target:  5'- aGCAACCGcGGCGGCg-GcGACcgGCCGGu -3'
miRNA:   3'- cCGUUGGUcCCGUCGgaC-CUG--CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 103549 0.66 0.819628
Target:  5'- cGGCcagccCCAGGccguGCGGgCUGGuCGCCGa -3'
miRNA:   3'- -CCGuu---GGUCC----CGUCgGACCuGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 189074 0.66 0.835415
Target:  5'- aGGCGGCCGcuucuugcgcccGGGCGGCggaGGugGCUuccaGGa -3'
miRNA:   3'- -CCGUUGGU------------CCCGUCGga-CCugCGG----CC- -5'
30217 5' -60.9 NC_006273.1 + 131041 0.66 0.811507
Target:  5'- cGCcGCCauuugacuuuacGGGGCAGCagcuGCGCCGGg -3'
miRNA:   3'- cCGuUGG------------UCCCGUCGgaccUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 189517 0.66 0.835415
Target:  5'- uGGCcagGACCAGGGaAGCCaguccGGuacCGCCGa -3'
miRNA:   3'- -CCG---UUGGUCCCgUCGGa----CCu--GCGGCc -5'
30217 5' -60.9 NC_006273.1 + 178835 0.66 0.835415
Target:  5'- cGCGACCAGGGCcaggaauguuGCgCgaaggGGACcccgcgggGCCGGc -3'
miRNA:   3'- cCGUUGGUCCCGu---------CG-Ga----CCUG--------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.