miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30217 5' -60.9 NC_006273.1 + 204185 1.11 0.001325
Target:  5'- cGGCAACCAGGGCAGCCUGGACGCCGGc -3'
miRNA:   3'- -CCGUUGGUCCCGUCGGACCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 23318 0.81 0.140923
Target:  5'- aGGCcACCGGGaCGGCCUGGGCGCCc- -3'
miRNA:   3'- -CCGuUGGUCCcGUCGGACCUGCGGcc -5'
30217 5' -60.9 NC_006273.1 + 120754 0.8 0.155136
Target:  5'- cGGCcGCCAGGGCGGCCaGGugaacACGgCCGGa -3'
miRNA:   3'- -CCGuUGGUCCCGUCGGaCC-----UGC-GGCC- -5'
30217 5' -60.9 NC_006273.1 + 14077 0.79 0.180584
Target:  5'- cGGCGGCCGGGGCugugaaccgcucaguGGCUcGGAcCGCCGGc -3'
miRNA:   3'- -CCGUUGGUCCCG---------------UCGGaCCU-GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 88576 0.78 0.220556
Target:  5'- cGCGcCaCAGuGGCGGCCaUGGGCGCCGGc -3'
miRNA:   3'- cCGUuG-GUC-CCGUCGG-ACCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 152838 0.76 0.27626
Target:  5'- uGGaCGACCucauGaGCGGCCUGGGCGCCGcGg -3'
miRNA:   3'- -CC-GUUGGu---CcCGUCGGACCUGCGGC-C- -5'
30217 5' -60.9 NC_006273.1 + 110234 0.76 0.295033
Target:  5'- uGGCGGuCUAGGGCccgugggacggAGaCUUGGGCGCCGGc -3'
miRNA:   3'- -CCGUU-GGUCCCG-----------UC-GGACCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 147580 0.76 0.295033
Target:  5'- gGGCGGCgGGGGCAGCg-GGuuauUGCCGGc -3'
miRNA:   3'- -CCGUUGgUCCCGUCGgaCCu---GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 42210 0.76 0.307428
Target:  5'- cGGCcGCCGaacGGGCAGCgUGGGCuucggcgGCCGGu -3'
miRNA:   3'- -CCGuUGGU---CCCGUCGgACCUG-------CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 70918 0.75 0.328498
Target:  5'- -cCGGCCucGGGUuGCCUGGACGCCuGGg -3'
miRNA:   3'- ccGUUGGu-CCCGuCGGACCUGCGG-CC- -5'
30217 5' -60.9 NC_006273.1 + 30657 0.74 0.364688
Target:  5'- cGGCAACCGcagaucgcagcGGGCGcGCCUcGGGgcuCGCCGGc -3'
miRNA:   3'- -CCGUUGGU-----------CCCGU-CGGA-CCU---GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 194775 0.74 0.387687
Target:  5'- cGGUgaaaGGCCGGGGCAGCC---GCGUCGGu -3'
miRNA:   3'- -CCG----UUGGUCCCGUCGGaccUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 66767 0.73 0.403541
Target:  5'- cGCGACCcGGGCAGCCgcggcucGGCGCUGa -3'
miRNA:   3'- cCGUUGGuCCCGUCGGac-----CUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 131830 0.73 0.411621
Target:  5'- cGGCGACCAGcccGCacGGCCUGGGgcugGCCGGc -3'
miRNA:   3'- -CCGUUGGUCc--CG--UCGGACCUg---CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 70810 0.73 0.411621
Target:  5'- cGGCAgcGCCAGcGGCcuGGCCUucGGcACGCUGGc -3'
miRNA:   3'- -CCGU--UGGUC-CCG--UCGGA--CC-UGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 106224 0.73 0.428076
Target:  5'- aGguGCCGcGGGUGGCCaGcGGCGCCGGu -3'
miRNA:   3'- cCguUGGU-CCCGUCGGaC-CUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 94394 0.73 0.428076
Target:  5'- gGGC-ACCGGGcGCGGCCcgcuccGGACcucgGCCGGg -3'
miRNA:   3'- -CCGuUGGUCC-CGUCGGa-----CCUG----CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 208648 0.73 0.435606
Target:  5'- uGCAACCAGGuGUaaguagaAGCCaGGACGCUGa -3'
miRNA:   3'- cCGUUGGUCC-CG-------UCGGaCCUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 163004 0.73 0.444913
Target:  5'- cGGCAGCUGcGGCGGUaggacacgcGGGCGCCGGa -3'
miRNA:   3'- -CCGUUGGUcCCGUCGga-------CCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 51677 0.72 0.45347
Target:  5'- aGGCugAGCCccGGUGGCCUGGAUGUgGGc -3'
miRNA:   3'- -CCG--UUGGucCCGUCGGACCUGCGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.