miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30217 5' -60.9 NC_006273.1 + 178960 0.66 0.811507
Target:  5'- cGGCuagAGCguGGGCcgcguGCCUGGgaacguGCGCaCGGc -3'
miRNA:   3'- -CCG---UUGguCCCGu----CGGACC------UGCG-GCC- -5'
30217 5' -60.9 NC_006273.1 + 145599 0.66 0.811507
Target:  5'- --gAGCgGGGGCccgagcgacGGUCUGGGCGgCGGu -3'
miRNA:   3'- ccgUUGgUCCCG---------UCGGACCUGCgGCC- -5'
30217 5' -60.9 NC_006273.1 + 117082 0.66 0.811507
Target:  5'- cGGUAGCgA-GGCGGCaaCUGGcguucaccACGCCGGc -3'
miRNA:   3'- -CCGUUGgUcCCGUCG--GACC--------UGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 145635 0.66 0.811507
Target:  5'- uGGUggUgGGGGUGGCggGGAUuCCGGg -3'
miRNA:   3'- -CCGuuGgUCCCGUCGgaCCUGcGGCC- -5'
30217 5' -60.9 NC_006273.1 + 101751 0.66 0.811507
Target:  5'- cGGCggUCGccGGCGGCaUGGGCGCguCGGg -3'
miRNA:   3'- -CCGuuGGUc-CCGUCGgACCUGCG--GCC- -5'
30217 5' -60.9 NC_006273.1 + 131041 0.66 0.811507
Target:  5'- cGCcGCCauuugacuuuacGGGGCAGCagcuGCGCCGGg -3'
miRNA:   3'- cCGuUGG------------UCCCGUCGgaccUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 158768 0.66 0.811507
Target:  5'- aGGCcGCCGGccGCGGCCacGGACGCguagCGGu -3'
miRNA:   3'- -CCGuUGGUCc-CGUCGGa-CCUGCG----GCC- -5'
30217 5' -60.9 NC_006273.1 + 188897 0.66 0.811507
Target:  5'- cGGCGuuuUCGGGaagGGCCUGGGCGucaCCGGc -3'
miRNA:   3'- -CCGUu--GGUCCcg-UCGGACCUGC---GGCC- -5'
30217 5' -60.9 NC_006273.1 + 176715 0.66 0.810687
Target:  5'- uGGUGACCgaggcggugguuuGGGGCAacgcgcGCUUGGACGCg-- -3'
miRNA:   3'- -CCGUUGG-------------UCCCGU------CGGACCUGCGgcc -5'
30217 5' -60.9 NC_006273.1 + 117811 0.66 0.803243
Target:  5'- uGGCGaaGCagaaggaGGGGCcGCUacGGCGCCGGg -3'
miRNA:   3'- -CCGU--UGg------UCCCGuCGGacCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 110201 0.66 0.803243
Target:  5'- cGCcGCUAuGGCGGCCaUGGAgGCCa- -3'
miRNA:   3'- cCGuUGGUcCCGUCGG-ACCUgCGGcc -5'
30217 5' -60.9 NC_006273.1 + 189401 0.66 0.803243
Target:  5'- gGGCGuugCGGGGCuuCUUGGaaucgugaagcgGCGCCGGg -3'
miRNA:   3'- -CCGUug-GUCCCGucGGACC------------UGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 178538 0.66 0.803243
Target:  5'- cGGCGGCgguggUAGcGGCAGCCucucuucgcUGGcuaAUGCCGGc -3'
miRNA:   3'- -CCGUUG-----GUC-CCGUCGG---------ACC---UGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 141034 0.66 0.798219
Target:  5'- uGGUgcuCCAGGGCGGUgggacgGGcccgcggacggaccgGCGCCGGg -3'
miRNA:   3'- -CCGuu-GGUCCCGUCGga----CC---------------UGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 200681 0.66 0.794843
Target:  5'- uGGCGGCCGccGGCGGUCagaaaaGGAaaaCGCCGGc -3'
miRNA:   3'- -CCGUUGGUc-CCGUCGGa-----CCU---GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 70670 0.66 0.794843
Target:  5'- cGCGACaCGGuGGCGGCgguggaGGGCGCgCGGc -3'
miRNA:   3'- cCGUUG-GUC-CCGUCGga----CCUGCG-GCC- -5'
30217 5' -60.9 NC_006273.1 + 116397 0.66 0.786315
Target:  5'- aGCAGCagucGCAGgCUGuGGCGCCGGu -3'
miRNA:   3'- cCGUUGguccCGUCgGAC-CUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 234672 0.66 0.786315
Target:  5'- uGGCGccGCCuuGGGGCcgugcAGUCUGGAagGCCGu -3'
miRNA:   3'- -CCGU--UGG--UCCCG-----UCGGACCUg-CGGCc -5'
30217 5' -60.9 NC_006273.1 + 117221 0.66 0.786315
Target:  5'- aGGCcGCCAcgccGGCGGCUgGGGCGCgCGu -3'
miRNA:   3'- -CCGuUGGUc---CCGUCGGaCCUGCG-GCc -5'
30217 5' -60.9 NC_006273.1 + 94090 0.66 0.786315
Target:  5'- cGGUAuuuuuCCAcuGGGCGGCCgcaccuagGGAgcgcgagccccgUGCCGGg -3'
miRNA:   3'- -CCGUu----GGU--CCCGUCGGa-------CCU------------GCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.