miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30217 5' -60.9 NC_006273.1 + 19 0.68 0.676629
Target:  5'- cGGCggUCGGGGUGuGUCggGGGCGCggCGGg -3'
miRNA:   3'- -CCGuuGGUCCCGU-CGGa-CCUGCG--GCC- -5'
30217 5' -60.9 NC_006273.1 + 943 0.72 0.479661
Target:  5'- cGGCGACgGcguuguuuucGGGCGugCUGGGCGCCGGc -3'
miRNA:   3'- -CCGUUGgU----------CCCGUcgGACCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 1057 0.67 0.760029
Target:  5'- cGGCGuCCAccGGGUAGaaccCCgcgGGcCGCCGGg -3'
miRNA:   3'- -CCGUuGGU--CCCGUC----GGa--CCuGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 1337 0.67 0.751059
Target:  5'- cGCAGCCAGaugaaCGGCgUGGGCGCgaCGGa -3'
miRNA:   3'- cCGUUGGUCcc---GUCGgACCUGCG--GCC- -5'
30217 5' -60.9 NC_006273.1 + 2171 0.69 0.619245
Target:  5'- cGGCGGCggCAGcGGCAGCagcgGcGGCGCCGa -3'
miRNA:   3'- -CCGUUG--GUC-CCGUCGga--C-CUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 2370 0.72 0.488556
Target:  5'- gGGCGugCuGGGC-GCgCUGG-CGCUGGg -3'
miRNA:   3'- -CCGUugGuCCCGuCG-GACCuGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 3670 0.68 0.676629
Target:  5'- uGCGAUCAGcGGCAuGCC--GACGCCGa -3'
miRNA:   3'- cCGUUGGUC-CCGU-CGGacCUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 4923 0.69 0.638408
Target:  5'- cGCccGCCGGGGCu-UCUGGAgaaCGCCGGa -3'
miRNA:   3'- cCGu-UGGUCCCGucGGACCU---GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 13563 0.69 0.625951
Target:  5'- cGGCGcaacGCCGggugcucacccgccGGGCGGCCcGGGcCGCCGu -3'
miRNA:   3'- -CCGU----UGGU--------------CCCGUCGGaCCU-GCGGCc -5'
30217 5' -60.9 NC_006273.1 + 14077 0.79 0.180584
Target:  5'- cGGCGGCCGGGGCugugaaccgcucaguGGCUcGGAcCGCCGGc -3'
miRNA:   3'- -CCGUUGGUCCCG---------------UCGGaCCU-GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 15145 0.68 0.704983
Target:  5'- cGCGGCCGGGacGCAGUUUuGugGCCGa -3'
miRNA:   3'- cCGUUGGUCC--CGUCGGAcCugCGGCc -5'
30217 5' -60.9 NC_006273.1 + 21653 0.68 0.676629
Target:  5'- uGGCGACCgAGaccaCGGCgCUGGugGCCGa -3'
miRNA:   3'- -CCGUUGG-UCcc--GUCG-GACCugCGGCc -5'
30217 5' -60.9 NC_006273.1 + 23318 0.81 0.140923
Target:  5'- aGGCcACCGGGaCGGCCUGGGCGCCc- -3'
miRNA:   3'- -CCGuUGGUCCcGUCGGACCUGCGGcc -5'
30217 5' -60.9 NC_006273.1 + 28829 0.67 0.7689
Target:  5'- aGCGGCuCGGGGCAGCagagguagCUGGccagACGCUGu -3'
miRNA:   3'- cCGUUG-GUCCCGUCG--------GACC----UGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 29122 0.67 0.760029
Target:  5'- uGGCGgaggGCCAGaagaGGCGGCCUugacGGCGuuGGc -3'
miRNA:   3'- -CCGU----UGGUC----CCGUCGGAc---CUGCggCC- -5'
30217 5' -60.9 NC_006273.1 + 30657 0.74 0.364688
Target:  5'- cGGCAACCGcagaucgcagcGGGCGcGCCUcGGGgcuCGCCGGc -3'
miRNA:   3'- -CCGUUGGU-----------CCCGU-CGGA-CCU---GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 33239 0.68 0.686122
Target:  5'- gGGCc-CCGGGGCGGCgacGACGgCGGg -3'
miRNA:   3'- -CCGuuGGUCCCGUCGgacCUGCgGCC- -5'
30217 5' -60.9 NC_006273.1 + 34228 0.67 0.741997
Target:  5'- gGGCAACCc--GCGGCacagGGcCGCCGGc -3'
miRNA:   3'- -CCGUUGGuccCGUCGga--CCuGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 34537 0.66 0.811507
Target:  5'- gGGCGGCaAGGGCAcGCCUcGAaGCgCGGc -3'
miRNA:   3'- -CCGUUGgUCCCGU-CGGAcCUgCG-GCC- -5'
30217 5' -60.9 NC_006273.1 + 34671 0.7 0.600115
Target:  5'- uGGCGugCuuGGGauGUUUGGGCGCCGGc -3'
miRNA:   3'- -CCGUugGu-CCCguCGGACCUGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.