miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30217 5' -60.9 NC_006273.1 + 34671 0.7 0.600115
Target:  5'- uGGCGugCuuGGGauGUUUGGGCGCCGGc -3'
miRNA:   3'- -CCGUugGu-CCCguCGGACCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 167333 0.72 0.488556
Target:  5'- cGGCGGCCAcGGCGGCgCUGGcCgagcccacaccuGCCGGc -3'
miRNA:   3'- -CCGUUGGUcCCGUCG-GACCuG------------CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 71706 0.71 0.533178
Target:  5'- uGGCAggcggucuguuuaACCAGcGcGCAGCCUcgacacagcgGGGCGCCGu -3'
miRNA:   3'- -CCGU-------------UGGUC-C-CGUCGGA----------CCUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 123613 0.71 0.534105
Target:  5'- cGCAGgaUAuGGCAGCCUGGGCGUgCGGg -3'
miRNA:   3'- cCGUUg-GUcCCGUCGGACCUGCG-GCC- -5'
30217 5' -60.9 NC_006273.1 + 191982 0.71 0.552753
Target:  5'- uGGUcaaGACCaAGGaGCAGcCCUGGugGCCc- -3'
miRNA:   3'- -CCG---UUGG-UCC-CGUC-GGACCugCGGcc -5'
30217 5' -60.9 NC_006273.1 + 145096 0.71 0.556506
Target:  5'- cGGCGGCgcugaucaccaccugCGGGGCAGCCcGGGCgauucGCCGc -3'
miRNA:   3'- -CCGUUG---------------GUCCCGUCGGaCCUG-----CGGCc -5'
30217 5' -60.9 NC_006273.1 + 113505 0.7 0.56215
Target:  5'- cGUAGCCGGcGGCGgguuGCCcgggGGGCGCgCGGg -3'
miRNA:   3'- cCGUUGGUC-CCGU----CGGa---CCUGCG-GCC- -5'
30217 5' -60.9 NC_006273.1 + 167174 0.7 0.581069
Target:  5'- uGGUGGCCAcggcGGGCgcagcGGCCgcGGAgGCCGGc -3'
miRNA:   3'- -CCGUUGGU----CCCG-----UCGGa-CCUgCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 232984 0.7 0.581069
Target:  5'- cGCGGCCucGGCGGC--GGGCGCCGa -3'
miRNA:   3'- cCGUUGGucCCGUCGgaCCUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 197263 0.72 0.488556
Target:  5'- gGGCGugCuGGGC-GCgCUGG-CGCUGGg -3'
miRNA:   3'- -CCGUugGuCCCGuCG-GACCuGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 943 0.72 0.479661
Target:  5'- cGGCGACgGcguuguuuucGGGCGugCUGGGCGCCGGc -3'
miRNA:   3'- -CCGUUGgU----------CCCGUcgGACCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 51677 0.72 0.45347
Target:  5'- aGGCugAGCCccGGUGGCCUGGAUGUgGGc -3'
miRNA:   3'- -CCG--UUGGucCCGUCGGACCUGCGgCC- -5'
30217 5' -60.9 NC_006273.1 + 120754 0.8 0.155136
Target:  5'- cGGCcGCCAGGGCGGCCaGGugaacACGgCCGGa -3'
miRNA:   3'- -CCGuUGGUCCCGUCGGaCC-----UGC-GGCC- -5'
30217 5' -60.9 NC_006273.1 + 88576 0.78 0.220556
Target:  5'- cGCGcCaCAGuGGCGGCCaUGGGCGCCGGc -3'
miRNA:   3'- cCGUuG-GUC-CCGUCGG-ACCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 110234 0.76 0.295033
Target:  5'- uGGCGGuCUAGGGCccgugggacggAGaCUUGGGCGCCGGc -3'
miRNA:   3'- -CCGUU-GGUCCCG-----------UC-GGACCUGCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 42210 0.76 0.307428
Target:  5'- cGGCcGCCGaacGGGCAGCgUGGGCuucggcgGCCGGu -3'
miRNA:   3'- -CCGuUGGU---CCCGUCGgACCUG-------CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 30657 0.74 0.364688
Target:  5'- cGGCAACCGcagaucgcagcGGGCGcGCCUcGGGgcuCGCCGGc -3'
miRNA:   3'- -CCGUUGGU-----------CCCGU-CGGA-CCU---GCGGCC- -5'
30217 5' -60.9 NC_006273.1 + 66767 0.73 0.403541
Target:  5'- cGCGACCcGGGCAGCCgcggcucGGCGCUGa -3'
miRNA:   3'- cCGUUGGuCCCGUCGGac-----CUGCGGCc -5'
30217 5' -60.9 NC_006273.1 + 94394 0.73 0.428076
Target:  5'- gGGC-ACCGGGcGCGGCCcgcuccGGACcucgGCCGGg -3'
miRNA:   3'- -CCGuUGGUCC-CGUCGGa-----CCUG----CGGCC- -5'
30217 5' -60.9 NC_006273.1 + 208648 0.73 0.435606
Target:  5'- uGCAACCAGGuGUaaguagaAGCCaGGACGCUGa -3'
miRNA:   3'- cCGUUGGUCC-CG-------UCGGaCCUGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.