miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 191513 0.66 0.9911
Target:  5'- gCGUUGucuCGCCUAUCaGCGUUCCu -3'
miRNA:   3'- aGUAGUuuuGCGGGUAGcCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 726 0.66 0.9911
Target:  5'- aCAUaaguaaGCgCGUCGGCGUCCUc -3'
miRNA:   3'- aGUAguuuugCGgGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 122756 0.66 0.9911
Target:  5'- ----aGAGGCGuCCCAggaGcGCGUCCCGu -3'
miRNA:   3'- aguagUUUUGC-GGGUag-C-CGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 37292 0.66 0.9911
Target:  5'- -uGUCGGGGCGCagaaacuuuuCCGUCGGUGgaaCCGu -3'
miRNA:   3'- agUAGUUUUGCG----------GGUAGCCGCag-GGC- -5'
30219 3' -53.7 NC_006273.1 + 40664 0.66 0.9911
Target:  5'- aCAUaaguaaGCgCGUCGGCGUCCUc -3'
miRNA:   3'- aGUAguuuugCGgGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 24873 0.66 0.9911
Target:  5'- -gAUCAAuuUGCCCucaucaaCGGCGUCUgGg -3'
miRNA:   3'- agUAGUUuuGCGGGua-----GCCGCAGGgC- -5'
30219 3' -53.7 NC_006273.1 + 56093 0.66 0.989894
Target:  5'- cUCGUCGuuGAUGCUCuggCGGCGcCgCCGg -3'
miRNA:   3'- -AGUAGUu-UUGCGGGua-GCCGCaG-GGC- -5'
30219 3' -53.7 NC_006273.1 + 73120 0.66 0.989894
Target:  5'- cUCcgCAGAAgGgCCGUCGcGaGUCCCGc -3'
miRNA:   3'- -AGuaGUUUUgCgGGUAGC-CgCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 40491 0.66 0.988702
Target:  5'- -gGUCGAGGCgGCCCGgcugcugccggacaGGCGaCCCGg -3'
miRNA:   3'- agUAGUUUUG-CGGGUag------------CCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 55098 0.66 0.988563
Target:  5'- -gGUgGAGACGguaCCGaCGGCGUCCgCGg -3'
miRNA:   3'- agUAgUUUUGCg--GGUaGCCGCAGG-GC- -5'
30219 3' -53.7 NC_006273.1 + 41191 0.66 0.988563
Target:  5'- -gGUCccuuaaaGCCCAaaccucaucagCGGCGUCCCGa -3'
miRNA:   3'- agUAGuuuug--CGGGUa----------GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 133614 0.66 0.987702
Target:  5'- cCAUCAAAaucagaccgcccgacGCGCCCAUgccgcCGGCGaCCg- -3'
miRNA:   3'- aGUAGUUU---------------UGCGGGUA-----GCCGCaGGgc -5'
30219 3' -53.7 NC_006273.1 + 220243 0.66 0.987101
Target:  5'- cCA-CAAAacuGCGuCCCGgccgCGGaCGUCCCGu -3'
miRNA:   3'- aGUaGUUU---UGC-GGGUa---GCC-GCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 134421 0.66 0.987101
Target:  5'- cCAUgAAAGCGCCCGgcauaaacaugUUGGcCGUCuuGc -3'
miRNA:   3'- aGUAgUUUUGCGGGU-----------AGCC-GCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 100984 0.66 0.987101
Target:  5'- uUCGUCcu--CGUCCAU-GGCGUCCa- -3'
miRNA:   3'- -AGUAGuuuuGCGGGUAgCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 201342 0.66 0.987101
Target:  5'- cUCcUCuuuguCGCCCuccgcggUGGCGUCCCa -3'
miRNA:   3'- -AGuAGuuuu-GCGGGua-----GCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 112787 0.66 0.986947
Target:  5'- cCAUCGcgcuggaGGACcugcuGCCCAUgcgacUGGCGUCCCc -3'
miRNA:   3'- aGUAGU-------UUUG-----CGGGUA-----GCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 119213 0.66 0.985499
Target:  5'- -gAUCGu-ACGCCuCAUCuGCGUCCUc -3'
miRNA:   3'- agUAGUuuUGCGG-GUAGcCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 119769 0.66 0.985499
Target:  5'- ---aCAGAACGUUCGcCGGCacgcuGUCCCGg -3'
miRNA:   3'- aguaGUUUUGCGGGUaGCCG-----CAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 100072 0.67 0.983749
Target:  5'- -uGUCAcAGGCGCCCga-GGCGUCgCa -3'
miRNA:   3'- agUAGU-UUUGCGGGuagCCGCAGgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.