Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30219 | 3' | -53.7 | NC_006273.1 | + | 72944 | 0.69 | 0.952324 |
Target: 5'- uUCAUCAAccggggaucccgcAGCaGUCCGUUGGCGgagUCCGa -3' miRNA: 3'- -AGUAGUU-------------UUG-CGGGUAGCCGCa--GGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 47223 | 0.69 | 0.939906 |
Target: 5'- cCAUgGAugUGCCCGacccggaacUCGGCGaCCCGg -3' miRNA: 3'- aGUAgUUuuGCGGGU---------AGCCGCaGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 87853 | 0.69 | 0.939906 |
Target: 5'- gUCAUCGGcGCGCCCccAUCG-CcUCCCGa -3' miRNA: 3'- -AGUAGUUuUGCGGG--UAGCcGcAGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 21569 | 0.69 | 0.939906 |
Target: 5'- cUCGUCG---UGCCCGUCGGCugccuGUUCCu -3' miRNA: 3'- -AGUAGUuuuGCGGGUAGCCG-----CAGGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 33869 | 0.69 | 0.939444 |
Target: 5'- gUCGUCGAccAGCGUCUgcgaccaGUCGGCGaagCCCa -3' miRNA: 3'- -AGUAGUU--UUGCGGG-------UAGCCGCa--GGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 167745 | 0.69 | 0.948672 |
Target: 5'- gCAUCu---CGCCCuuaaCGGCGUCCa- -3' miRNA: 3'- aGUAGuuuuGCGGGua--GCCGCAGGgc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 102827 | 0.69 | 0.952719 |
Target: 5'- gUCAUCGAAagGCGCgCCggCcGCGUCCaCGg -3' miRNA: 3'- -AGUAGUUU--UGCG-GGuaGcCGCAGG-GC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 209264 | 0.69 | 0.952719 |
Target: 5'- -uGUCGGgaccgcAGCGCCCggCGGCGUaUCCGc -3' miRNA: 3'- agUAGUU------UUGCGGGuaGCCGCA-GGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 38917 | 0.69 | 0.944402 |
Target: 5'- aCGU-GGGACGCCCAaggCGGCGUacgCCGa -3' miRNA: 3'- aGUAgUUUUGCGGGUa--GCCGCAg--GGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 30163 | 0.68 | 0.966743 |
Target: 5'- ---cCGGGACGCCgAUgGGCGUUuuGa -3' miRNA: 3'- aguaGUUUUGCGGgUAgCCGCAGggC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 131249 | 0.68 | 0.963553 |
Target: 5'- cUCGUCcau-CGCCgCGUCGG-GUCUCGg -3' miRNA: 3'- -AGUAGuuuuGCGG-GUAGCCgCAGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 33089 | 0.68 | 0.963553 |
Target: 5'- gUCAUCGccGCGCCuCGUCGGuCGaugacCCCa -3' miRNA: 3'- -AGUAGUuuUGCGG-GUAGCC-GCa----GGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 111737 | 0.68 | 0.963553 |
Target: 5'- uUCAUCGAAguACGauuaaGUCGGCGgauUCCCGa -3' miRNA: 3'- -AGUAGUUU--UGCggg--UAGCCGC---AGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 190477 | 0.68 | 0.963553 |
Target: 5'- aUCGUgGGAACGcCCCAUUGGCauugCCaCGa -3' miRNA: 3'- -AGUAgUUUUGC-GGGUAGCCGca--GG-GC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 190594 | 0.68 | 0.963553 |
Target: 5'- aCGUCcgccGGCGCCCAUCGGCcgcgcgaucUCCUa -3' miRNA: 3'- aGUAGuu--UUGCGGGUAGCCGc--------AGGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 211740 | 0.68 | 0.966433 |
Target: 5'- aCGUCGAGguagauguuugcgGCGCCUGUgguaaaccgUGGUGUCCCa -3' miRNA: 3'- aGUAGUUU-------------UGCGGGUA---------GCCGCAGGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 45235 | 0.68 | 0.966743 |
Target: 5'- ---cCAAuACGgUCAUcgaCGGCGUCCCGg -3' miRNA: 3'- aguaGUUuUGCgGGUA---GCCGCAGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 212401 | 0.67 | 0.977537 |
Target: 5'- cCGUCGAuGCGUCCGccguguuucUCGGCGUacugcugcaCCCa -3' miRNA: 3'- aGUAGUUuUGCGGGU---------AGCCGCA---------GGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 80195 | 0.67 | 0.977537 |
Target: 5'- ---aCAGAucGCGCaCCAauaCGGCGUCCUGc -3' miRNA: 3'- aguaGUUU--UGCG-GGUa--GCCGCAGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 164458 | 0.67 | 0.979776 |
Target: 5'- gCGUC---GCGCCCA--GGCGUCCa- -3' miRNA: 3'- aGUAGuuuUGCGGGUagCCGCAGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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