miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 121027 0.67 0.980623
Target:  5'- gUCGUCGu--CGCCCugggCGGCacccucgucgugccgGUCCCa -3'
miRNA:   3'- -AGUAGUuuuGCGGGua--GCCG---------------CAGGGc -5'
30219 3' -53.7 NC_006273.1 + 217135 0.67 0.979776
Target:  5'- cUCGUaga---GCCCGUCGGUcUCCCa -3'
miRNA:   3'- -AGUAguuuugCGGGUAGCCGcAGGGc -5'
30219 3' -53.7 NC_006273.1 + 212401 0.67 0.977537
Target:  5'- cCGUCGAuGCGUCCGccguguuucUCGGCGUacugcugcaCCCa -3'
miRNA:   3'- aGUAGUUuUGCGGGU---------AGCCGCA---------GGGc -5'
30219 3' -53.7 NC_006273.1 + 120556 0.67 0.981844
Target:  5'- gCGUCGAGGCgaugcaugGCCCGggcaaGGCGUCuuGc -3'
miRNA:   3'- aGUAGUUUUG--------CGGGUag---CCGCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 194785 0.67 0.979776
Target:  5'- ---cCGGGGCaGCCgCGUCGGUGUUCCu -3'
miRNA:   3'- aguaGUUUUG-CGG-GUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 100072 0.67 0.983749
Target:  5'- -uGUCAcAGGCGCCCga-GGCGUCgCa -3'
miRNA:   3'- agUAGU-UUUGCGGGuagCCGCAGgGc -5'
30219 3' -53.7 NC_006273.1 + 80195 0.67 0.977537
Target:  5'- ---aCAGAucGCGCaCCAauaCGGCGUCCUGc -3'
miRNA:   3'- aguaGUUU--UGCG-GGUa--GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 88043 0.67 0.975121
Target:  5'- cCGUUAAu-CGCUgggCGUCGGCGUCCa- -3'
miRNA:   3'- aGUAGUUuuGCGG---GUAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 22279 0.67 0.975121
Target:  5'- cCGUCGGuGCGCUCAUCuGCGgcagcgguaCCCGa -3'
miRNA:   3'- aGUAGUUuUGCGGGUAGcCGCa--------GGGC- -5'
30219 3' -53.7 NC_006273.1 + 142490 0.67 0.975121
Target:  5'- aUCAUCAccACGUCCAUCcGCGgCCUu -3'
miRNA:   3'- -AGUAGUuuUGCGGGUAGcCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 201066 0.67 0.975121
Target:  5'- aCGUCAGu-CGCCCAcccccauuacaCGGCGauaUCCCGa -3'
miRNA:   3'- aGUAGUUuuGCGGGUa----------GCCGC---AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 176130 0.67 0.972521
Target:  5'- cCAUCAauaggGAACGCugCCAgCGGCG-CCCa -3'
miRNA:   3'- aGUAGU-----UUUGCG--GGUaGCCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 125270 0.67 0.979776
Target:  5'- gCGUCAGAGCGagCGUgGcGCGUCCgGg -3'
miRNA:   3'- aGUAGUUUUGCggGUAgC-CGCAGGgC- -5'
30219 3' -53.7 NC_006273.1 + 40491 0.66 0.988702
Target:  5'- -gGUCGAGGCgGCCCGgcugcugccggacaGGCGaCCCGg -3'
miRNA:   3'- agUAGUUUUG-CGGGUag------------CCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 40664 0.66 0.9911
Target:  5'- aCAUaaguaaGCgCGUCGGCGUCCUc -3'
miRNA:   3'- aGUAguuuugCGgGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 41191 0.66 0.988563
Target:  5'- -gGUCccuuaaaGCCCAaaccucaucagCGGCGUCCCGa -3'
miRNA:   3'- agUAGuuuug--CGGGUa----------GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 122756 0.66 0.9911
Target:  5'- ----aGAGGCGuCCCAggaGcGCGUCCCGu -3'
miRNA:   3'- aguagUUUUGC-GGGUag-C-CGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 726 0.66 0.9911
Target:  5'- aCAUaaguaaGCgCGUCGGCGUCCUc -3'
miRNA:   3'- aGUAguuuugCGgGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 191513 0.66 0.9911
Target:  5'- gCGUUGucuCGCCUAUCaGCGUUCCu -3'
miRNA:   3'- aGUAGUuuuGCGGGUAGcCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 55098 0.66 0.988563
Target:  5'- -gGUgGAGACGguaCCGaCGGCGUCCgCGg -3'
miRNA:   3'- agUAgUUUUGCg--GGUaGCCGCAGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.