miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 205221 1.1 0.006568
Target:  5'- uUCAUCAAAACGCCCAUCGGCGUCCCGg -3'
miRNA:   3'- -AGUAGUUUUGCGGGUAGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 26589 0.76 0.631095
Target:  5'- gCGcCAcAGCGCCCAUCGGCGUUUCc -3'
miRNA:   3'- aGUaGUuUUGCGGGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 99280 0.75 0.720492
Target:  5'- -gGUCAAAAgcgcgaucgcCGCCCA-CGGCGUCCuCGg -3'
miRNA:   3'- agUAGUUUU----------GCGGGUaGCCGCAGG-GC- -5'
30219 3' -53.7 NC_006273.1 + 108163 0.74 0.730173
Target:  5'- aCAUCGAGGCGCgacaCCA-CGGCGUUUCGg -3'
miRNA:   3'- aGUAGUUUUGCG----GGUaGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 87453 0.74 0.739774
Target:  5'- gCcgCGccGACGCUCAUCGGCGUCCg- -3'
miRNA:   3'- aGuaGUu-UUGCGGGUAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 189195 0.74 0.739774
Target:  5'- -gAUCGGccGAUGCUgGUCGGCGuUCCCGg -3'
miRNA:   3'- agUAGUU--UUGCGGgUAGCCGC-AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 197185 0.73 0.803964
Target:  5'- cCGUCuccggauGAGCGgCCGcggcgcgggcUCGGCGUCCCGc -3'
miRNA:   3'- aGUAGu------UUUGCgGGU----------AGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 64304 0.72 0.821082
Target:  5'- uUCuUgGAGGCGCCCugggaAUCGGCGcCCCa -3'
miRNA:   3'- -AGuAgUUUUGCGGG-----UAGCCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 64510 0.72 0.837541
Target:  5'- -gAUCGAccCGCCCGccggcucgacaUCGGUGUCCCu -3'
miRNA:   3'- agUAGUUuuGCGGGU-----------AGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 212063 0.72 0.853281
Target:  5'- -gGUgGGGGCGCCCA--GGcCGUCCCGg -3'
miRNA:   3'- agUAgUUUUGCGGGUagCC-GCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 97738 0.72 0.860865
Target:  5'- aCAUCucGACGCCCGggugaCGGacgacggcaagaCGUCCCGg -3'
miRNA:   3'- aGUAGuuUUGCGGGUa----GCC------------GCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 184914 0.71 0.875433
Target:  5'- uUCAUCAGccuAugGCCUuugaCGGCGUCCa- -3'
miRNA:   3'- -AGUAGUU---UugCGGGua--GCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 66749 0.71 0.882406
Target:  5'- gUCAUCGAGACGCUgGUgcGCGaCCCGg -3'
miRNA:   3'- -AGUAGUUUUGCGGgUAgcCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 120799 0.71 0.895706
Target:  5'- gUUGUCGGAAUcCUCGUCGGUGUCCUc -3'
miRNA:   3'- -AGUAGUUUUGcGGGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 52635 0.7 0.908123
Target:  5'- -aGUCcuGAGAgGCCC-UCGGCGUCCa- -3'
miRNA:   3'- agUAG--UUUUgCGGGuAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 171212 0.7 0.908123
Target:  5'- cCGUCAGAcagagcuguGCGCCg--CGGCGUUCCa -3'
miRNA:   3'- aGUAGUUU---------UGCGGguaGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 44885 0.7 0.925047
Target:  5'- uUCAUUAuAACGCCaCGUCGGag-CCCu -3'
miRNA:   3'- -AGUAGUuUUGCGG-GUAGCCgcaGGGc -5'
30219 3' -53.7 NC_006273.1 + 82310 0.69 0.935183
Target:  5'- aCGUCAcGGugGuCCCGUCGGCGgacaCCa -3'
miRNA:   3'- aGUAGU-UUugC-GGGUAGCCGCag--GGc -5'
30219 3' -53.7 NC_006273.1 + 95201 0.69 0.939444
Target:  5'- cCAUCGGc-CGCCCAgccggggUCGGCGcCUCGg -3'
miRNA:   3'- aGUAGUUuuGCGGGU-------AGCCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 33869 0.69 0.939444
Target:  5'- gUCGUCGAccAGCGUCUgcgaccaGUCGGCGaagCCCa -3'
miRNA:   3'- -AGUAGUU--UUGCGGG-------UAGCCGCa--GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.