miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 120556 0.67 0.981844
Target:  5'- gCGUCGAGGCgaugcaugGCCCGggcaaGGCGUCuuGc -3'
miRNA:   3'- aGUAGUUUUG--------CGGGUag---CCGCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 121027 0.67 0.980623
Target:  5'- gUCGUCGu--CGCCCugggCGGCacccucgucgugccgGUCCCa -3'
miRNA:   3'- -AGUAGUuuuGCGGGua--GCCG---------------CAGGGc -5'
30219 3' -53.7 NC_006273.1 + 194785 0.67 0.979776
Target:  5'- ---cCGGGGCaGCCgCGUCGGUGUUCCu -3'
miRNA:   3'- aguaGUUUUG-CGG-GUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 217135 0.67 0.979776
Target:  5'- cUCGUaga---GCCCGUCGGUcUCCCa -3'
miRNA:   3'- -AGUAguuuugCGGGUAGCCGcAGGGc -5'
30219 3' -53.7 NC_006273.1 + 125270 0.67 0.979776
Target:  5'- gCGUCAGAGCGagCGUgGcGCGUCCgGg -3'
miRNA:   3'- aGUAGUUUUGCggGUAgC-CGCAGGgC- -5'
30219 3' -53.7 NC_006273.1 + 164458 0.67 0.979776
Target:  5'- gCGUC---GCGCCCA--GGCGUCCa- -3'
miRNA:   3'- aGUAGuuuUGCGGGUagCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 56517 0.67 0.979776
Target:  5'- gUC-UCGAGAaugccgGCCCcgCGGgGUCCCc -3'
miRNA:   3'- -AGuAGUUUUg-----CGGGuaGCCgCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 212401 0.67 0.977537
Target:  5'- cCGUCGAuGCGUCCGccguguuucUCGGCGUacugcugcaCCCa -3'
miRNA:   3'- aGUAGUUuUGCGGGU---------AGCCGCA---------GGGc -5'
30219 3' -53.7 NC_006273.1 + 80195 0.67 0.977537
Target:  5'- ---aCAGAucGCGCaCCAauaCGGCGUCCUGc -3'
miRNA:   3'- aguaGUUU--UGCG-GGUa--GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 175060 0.67 0.975121
Target:  5'- -gGUgGcgGCGUCgucaGUUGGCGUCCCGa -3'
miRNA:   3'- agUAgUuuUGCGGg---UAGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 142490 0.67 0.975121
Target:  5'- aUCAUCAccACGUCCAUCcGCGgCCUu -3'
miRNA:   3'- -AGUAGUuuUGCGGGUAGcCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 22279 0.67 0.975121
Target:  5'- cCGUCGGuGCGCUCAUCuGCGgcagcgguaCCCGa -3'
miRNA:   3'- aGUAGUUuUGCGGGUAGcCGCa--------GGGC- -5'
30219 3' -53.7 NC_006273.1 + 201066 0.67 0.975121
Target:  5'- aCGUCAGu-CGCCCAcccccauuacaCGGCGauaUCCCGa -3'
miRNA:   3'- aGUAGUUuuGCGGGUa----------GCCGC---AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 88043 0.67 0.975121
Target:  5'- cCGUUAAu-CGCUgggCGUCGGCGUCCa- -3'
miRNA:   3'- aGUAGUUuuGCGG---GUAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 176130 0.67 0.972521
Target:  5'- cCAUCAauaggGAACGCugCCAgCGGCG-CCCa -3'
miRNA:   3'- aGUAGU-----UUUGCG--GGUaGCCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 45235 0.68 0.966743
Target:  5'- ---cCAAuACGgUCAUcgaCGGCGUCCCGg -3'
miRNA:   3'- aguaGUUuUGCgGGUA---GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 30163 0.68 0.966743
Target:  5'- ---cCGGGACGCCgAUgGGCGUUuuGa -3'
miRNA:   3'- aguaGUUUUGCGGgUAgCCGCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 211740 0.68 0.966433
Target:  5'- aCGUCGAGguagauguuugcgGCGCCUGUgguaaaccgUGGUGUCCCa -3'
miRNA:   3'- aGUAGUUU-------------UGCGGGUA---------GCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 190477 0.68 0.963553
Target:  5'- aUCGUgGGAACGcCCCAUUGGCauugCCaCGa -3'
miRNA:   3'- -AGUAgUUUUGC-GGGUAGCCGca--GG-GC- -5'
30219 3' -53.7 NC_006273.1 + 131249 0.68 0.963553
Target:  5'- cUCGUCcau-CGCCgCGUCGG-GUCUCGg -3'
miRNA:   3'- -AGUAGuuuuGCGG-GUAGCCgCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.