miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 726 0.66 0.9911
Target:  5'- aCAUaaguaaGCgCGUCGGCGUCCUc -3'
miRNA:   3'- aGUAguuuugCGgGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 21569 0.69 0.939906
Target:  5'- cUCGUCG---UGCCCGUCGGCugccuGUUCCu -3'
miRNA:   3'- -AGUAGUuuuGCGGGUAGCCG-----CAGGGc -5'
30219 3' -53.7 NC_006273.1 + 22279 0.67 0.975121
Target:  5'- cCGUCGGuGCGCUCAUCuGCGgcagcgguaCCCGa -3'
miRNA:   3'- aGUAGUUuUGCGGGUAGcCGCa--------GGGC- -5'
30219 3' -53.7 NC_006273.1 + 24873 0.66 0.9911
Target:  5'- -gAUCAAuuUGCCCucaucaaCGGCGUCUgGg -3'
miRNA:   3'- agUAGUUuuGCGGGua-----GCCGCAGGgC- -5'
30219 3' -53.7 NC_006273.1 + 26589 0.76 0.631095
Target:  5'- gCGcCAcAGCGCCCAUCGGCGUUUCc -3'
miRNA:   3'- aGUaGUuUUGCGGGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 30163 0.68 0.966743
Target:  5'- ---cCGGGACGCCgAUgGGCGUUuuGa -3'
miRNA:   3'- aguaGUUUUGCGGgUAgCCGCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 33089 0.68 0.963553
Target:  5'- gUCAUCGccGCGCCuCGUCGGuCGaugacCCCa -3'
miRNA:   3'- -AGUAGUuuUGCGG-GUAGCC-GCa----GGGc -5'
30219 3' -53.7 NC_006273.1 + 33869 0.69 0.939444
Target:  5'- gUCGUCGAccAGCGUCUgcgaccaGUCGGCGaagCCCa -3'
miRNA:   3'- -AGUAGUU--UUGCGGG-------UAGCCGCa--GGGc -5'
30219 3' -53.7 NC_006273.1 + 37292 0.66 0.9911
Target:  5'- -uGUCGGGGCGCagaaacuuuuCCGUCGGUGgaaCCGu -3'
miRNA:   3'- agUAGUUUUGCG----------GGUAGCCGCag-GGC- -5'
30219 3' -53.7 NC_006273.1 + 38917 0.69 0.944402
Target:  5'- aCGU-GGGACGCCCAaggCGGCGUacgCCGa -3'
miRNA:   3'- aGUAgUUUUGCGGGUa--GCCGCAg--GGC- -5'
30219 3' -53.7 NC_006273.1 + 40491 0.66 0.988702
Target:  5'- -gGUCGAGGCgGCCCGgcugcugccggacaGGCGaCCCGg -3'
miRNA:   3'- agUAGUUUUG-CGGGUag------------CCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 40664 0.66 0.9911
Target:  5'- aCAUaaguaaGCgCGUCGGCGUCCUc -3'
miRNA:   3'- aGUAguuuugCGgGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 41191 0.66 0.988563
Target:  5'- -gGUCccuuaaaGCCCAaaccucaucagCGGCGUCCCGa -3'
miRNA:   3'- agUAGuuuug--CGGGUa----------GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 42707 0.69 0.948672
Target:  5'- gCGUUGAccAGCGCCgUGUUGGCGUgCCGg -3'
miRNA:   3'- aGUAGUU--UUGCGG-GUAGCCGCAgGGC- -5'
30219 3' -53.7 NC_006273.1 + 44885 0.7 0.925047
Target:  5'- uUCAUUAuAACGCCaCGUCGGag-CCCu -3'
miRNA:   3'- -AGUAGUuUUGCGG-GUAGCCgcaGGGc -5'
30219 3' -53.7 NC_006273.1 + 45235 0.68 0.966743
Target:  5'- ---cCAAuACGgUCAUcgaCGGCGUCCCGg -3'
miRNA:   3'- aguaGUUuUGCgGGUA---GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 47223 0.69 0.939906
Target:  5'- cCAUgGAugUGCCCGacccggaacUCGGCGaCCCGg -3'
miRNA:   3'- aGUAgUUuuGCGGGU---------AGCCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 52635 0.7 0.908123
Target:  5'- -aGUCcuGAGAgGCCC-UCGGCGUCCa- -3'
miRNA:   3'- agUAG--UUUUgCGGGuAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 55098 0.66 0.988563
Target:  5'- -gGUgGAGACGguaCCGaCGGCGUCCgCGg -3'
miRNA:   3'- agUAgUUUUGCg--GGUaGCCGCAGG-GC- -5'
30219 3' -53.7 NC_006273.1 + 56093 0.66 0.989894
Target:  5'- cUCGUCGuuGAUGCUCuggCGGCGcCgCCGg -3'
miRNA:   3'- -AGUAGUu-UUGCGGGua-GCCGCaG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.