miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 119213 0.66 0.985499
Target:  5'- -gAUCGu-ACGCCuCAUCuGCGUCCUc -3'
miRNA:   3'- agUAGUuuUGCGG-GUAGcCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 119769 0.66 0.985499
Target:  5'- ---aCAGAACGUUCGcCGGCacgcuGUCCCGg -3'
miRNA:   3'- aguaGUUUUGCGGGUaGCCG-----CAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 120556 0.67 0.981844
Target:  5'- gCGUCGAGGCgaugcaugGCCCGggcaaGGCGUCuuGc -3'
miRNA:   3'- aGUAGUUUUG--------CGGGUag---CCGCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 120799 0.71 0.895706
Target:  5'- gUUGUCGGAAUcCUCGUCGGUGUCCUc -3'
miRNA:   3'- -AGUAGUUUUGcGGGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 121027 0.67 0.980623
Target:  5'- gUCGUCGu--CGCCCugggCGGCacccucgucgugccgGUCCCa -3'
miRNA:   3'- -AGUAGUuuuGCGGGua--GCCG---------------CAGGGc -5'
30219 3' -53.7 NC_006273.1 + 122756 0.66 0.9911
Target:  5'- ----aGAGGCGuCCCAggaGcGCGUCCCGu -3'
miRNA:   3'- aguagUUUUGC-GGGUag-C-CGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 125270 0.67 0.979776
Target:  5'- gCGUCAGAGCGagCGUgGcGCGUCCgGg -3'
miRNA:   3'- aGUAGUUUUGCggGUAgC-CGCAGGgC- -5'
30219 3' -53.7 NC_006273.1 + 131249 0.68 0.963553
Target:  5'- cUCGUCcau-CGCCgCGUCGG-GUCUCGg -3'
miRNA:   3'- -AGUAGuuuuGCGG-GUAGCCgCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 133614 0.66 0.987702
Target:  5'- cCAUCAAAaucagaccgcccgacGCGCCCAUgccgcCGGCGaCCg- -3'
miRNA:   3'- aGUAGUUU---------------UGCGGGUA-----GCCGCaGGgc -5'
30219 3' -53.7 NC_006273.1 + 134421 0.66 0.987101
Target:  5'- cCAUgAAAGCGCCCGgcauaaacaugUUGGcCGUCuuGc -3'
miRNA:   3'- aGUAgUUUUGCGGGU-----------AGCC-GCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 142490 0.67 0.975121
Target:  5'- aUCAUCAccACGUCCAUCcGCGgCCUu -3'
miRNA:   3'- -AGUAGUuuUGCGGGUAGcCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 164458 0.67 0.979776
Target:  5'- gCGUC---GCGCCCA--GGCGUCCa- -3'
miRNA:   3'- aGUAGuuuUGCGGGUagCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 167745 0.69 0.948672
Target:  5'- gCAUCu---CGCCCuuaaCGGCGUCCa- -3'
miRNA:   3'- aGUAGuuuuGCGGGua--GCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 171212 0.7 0.908123
Target:  5'- cCGUCAGAcagagcuguGCGCCg--CGGCGUUCCa -3'
miRNA:   3'- aGUAGUUU---------UGCGGguaGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 175060 0.67 0.975121
Target:  5'- -gGUgGcgGCGUCgucaGUUGGCGUCCCGa -3'
miRNA:   3'- agUAgUuuUGCGGg---UAGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 176130 0.67 0.972521
Target:  5'- cCAUCAauaggGAACGCugCCAgCGGCG-CCCa -3'
miRNA:   3'- aGUAGU-----UUUGCG--GGUaGCCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 184914 0.71 0.875433
Target:  5'- uUCAUCAGccuAugGCCUuugaCGGCGUCCa- -3'
miRNA:   3'- -AGUAGUU---UugCGGGua--GCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 189195 0.74 0.739774
Target:  5'- -gAUCGGccGAUGCUgGUCGGCGuUCCCGg -3'
miRNA:   3'- agUAGUU--UUGCGGgUAGCCGC-AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 190477 0.68 0.963553
Target:  5'- aUCGUgGGAACGcCCCAUUGGCauugCCaCGa -3'
miRNA:   3'- -AGUAgUUUUGC-GGGUAGCCGca--GG-GC- -5'
30219 3' -53.7 NC_006273.1 + 190594 0.68 0.963553
Target:  5'- aCGUCcgccGGCGCCCAUCGGCcgcgcgaucUCCUa -3'
miRNA:   3'- aGUAGuu--UUGCGGGUAGCCGc--------AGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.