miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 220243 0.66 0.987101
Target:  5'- cCA-CAAAacuGCGuCCCGgccgCGGaCGUCCCGu -3'
miRNA:   3'- aGUaGUUU---UGC-GGGUa---GCC-GCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 217135 0.67 0.979776
Target:  5'- cUCGUaga---GCCCGUCGGUcUCCCa -3'
miRNA:   3'- -AGUAguuuugCGGGUAGCCGcAGGGc -5'
30219 3' -53.7 NC_006273.1 + 212401 0.67 0.977537
Target:  5'- cCGUCGAuGCGUCCGccguguuucUCGGCGUacugcugcaCCCa -3'
miRNA:   3'- aGUAGUUuUGCGGGU---------AGCCGCA---------GGGc -5'
30219 3' -53.7 NC_006273.1 + 212063 0.72 0.853281
Target:  5'- -gGUgGGGGCGCCCA--GGcCGUCCCGg -3'
miRNA:   3'- agUAgUUUUGCGGGUagCC-GCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 211740 0.68 0.966433
Target:  5'- aCGUCGAGguagauguuugcgGCGCCUGUgguaaaccgUGGUGUCCCa -3'
miRNA:   3'- aGUAGUUU-------------UGCGGGUA---------GCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 209264 0.69 0.952719
Target:  5'- -uGUCGGgaccgcAGCGCCCggCGGCGUaUCCGc -3'
miRNA:   3'- agUAGUU------UUGCGGGuaGCCGCA-GGGC- -5'
30219 3' -53.7 NC_006273.1 + 205221 1.1 0.006568
Target:  5'- uUCAUCAAAACGCCCAUCGGCGUCCCGg -3'
miRNA:   3'- -AGUAGUUUUGCGGGUAGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 201342 0.66 0.987101
Target:  5'- cUCcUCuuuguCGCCCuccgcggUGGCGUCCCa -3'
miRNA:   3'- -AGuAGuuuu-GCGGGua-----GCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 201066 0.67 0.975121
Target:  5'- aCGUCAGu-CGCCCAcccccauuacaCGGCGauaUCCCGa -3'
miRNA:   3'- aGUAGUUuuGCGGGUa----------GCCGC---AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 197185 0.73 0.803964
Target:  5'- cCGUCuccggauGAGCGgCCGcggcgcgggcUCGGCGUCCCGc -3'
miRNA:   3'- aGUAGu------UUUGCgGGU----------AGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 194785 0.67 0.979776
Target:  5'- ---cCGGGGCaGCCgCGUCGGUGUUCCu -3'
miRNA:   3'- aguaGUUUUG-CGG-GUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 191513 0.66 0.9911
Target:  5'- gCGUUGucuCGCCUAUCaGCGUUCCu -3'
miRNA:   3'- aGUAGUuuuGCGGGUAGcCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 190594 0.68 0.963553
Target:  5'- aCGUCcgccGGCGCCCAUCGGCcgcgcgaucUCCUa -3'
miRNA:   3'- aGUAGuu--UUGCGGGUAGCCGc--------AGGGc -5'
30219 3' -53.7 NC_006273.1 + 190477 0.68 0.963553
Target:  5'- aUCGUgGGAACGcCCCAUUGGCauugCCaCGa -3'
miRNA:   3'- -AGUAgUUUUGC-GGGUAGCCGca--GG-GC- -5'
30219 3' -53.7 NC_006273.1 + 189195 0.74 0.739774
Target:  5'- -gAUCGGccGAUGCUgGUCGGCGuUCCCGg -3'
miRNA:   3'- agUAGUU--UUGCGGgUAGCCGC-AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 184914 0.71 0.875433
Target:  5'- uUCAUCAGccuAugGCCUuugaCGGCGUCCa- -3'
miRNA:   3'- -AGUAGUU---UugCGGGua--GCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 176130 0.67 0.972521
Target:  5'- cCAUCAauaggGAACGCugCCAgCGGCG-CCCa -3'
miRNA:   3'- aGUAGU-----UUUGCG--GGUaGCCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 175060 0.67 0.975121
Target:  5'- -gGUgGcgGCGUCgucaGUUGGCGUCCCGa -3'
miRNA:   3'- agUAgUuuUGCGGg---UAGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 171212 0.7 0.908123
Target:  5'- cCGUCAGAcagagcuguGCGCCg--CGGCGUUCCa -3'
miRNA:   3'- aGUAGUUU---------UGCGGguaGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 167745 0.69 0.948672
Target:  5'- gCAUCu---CGCCCuuaaCGGCGUCCa- -3'
miRNA:   3'- aGUAGuuuuGCGGGua--GCCGCAGGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.