miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 164458 0.67 0.979776
Target:  5'- gCGUC---GCGCCCA--GGCGUCCa- -3'
miRNA:   3'- aGUAGuuuUGCGGGUagCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 142490 0.67 0.975121
Target:  5'- aUCAUCAccACGUCCAUCcGCGgCCUu -3'
miRNA:   3'- -AGUAGUuuUGCGGGUAGcCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 134421 0.66 0.987101
Target:  5'- cCAUgAAAGCGCCCGgcauaaacaugUUGGcCGUCuuGc -3'
miRNA:   3'- aGUAgUUUUGCGGGU-----------AGCC-GCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 133614 0.66 0.987702
Target:  5'- cCAUCAAAaucagaccgcccgacGCGCCCAUgccgcCGGCGaCCg- -3'
miRNA:   3'- aGUAGUUU---------------UGCGGGUA-----GCCGCaGGgc -5'
30219 3' -53.7 NC_006273.1 + 131249 0.68 0.963553
Target:  5'- cUCGUCcau-CGCCgCGUCGG-GUCUCGg -3'
miRNA:   3'- -AGUAGuuuuGCGG-GUAGCCgCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 125270 0.67 0.979776
Target:  5'- gCGUCAGAGCGagCGUgGcGCGUCCgGg -3'
miRNA:   3'- aGUAGUUUUGCggGUAgC-CGCAGGgC- -5'
30219 3' -53.7 NC_006273.1 + 122756 0.66 0.9911
Target:  5'- ----aGAGGCGuCCCAggaGcGCGUCCCGu -3'
miRNA:   3'- aguagUUUUGC-GGGUag-C-CGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 121027 0.67 0.980623
Target:  5'- gUCGUCGu--CGCCCugggCGGCacccucgucgugccgGUCCCa -3'
miRNA:   3'- -AGUAGUuuuGCGGGua--GCCG---------------CAGGGc -5'
30219 3' -53.7 NC_006273.1 + 120799 0.71 0.895706
Target:  5'- gUUGUCGGAAUcCUCGUCGGUGUCCUc -3'
miRNA:   3'- -AGUAGUUUUGcGGGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 120556 0.67 0.981844
Target:  5'- gCGUCGAGGCgaugcaugGCCCGggcaaGGCGUCuuGc -3'
miRNA:   3'- aGUAGUUUUG--------CGGGUag---CCGCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 119769 0.66 0.985499
Target:  5'- ---aCAGAACGUUCGcCGGCacgcuGUCCCGg -3'
miRNA:   3'- aguaGUUUUGCGGGUaGCCG-----CAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 119213 0.66 0.985499
Target:  5'- -gAUCGu-ACGCCuCAUCuGCGUCCUc -3'
miRNA:   3'- agUAGUuuUGCGG-GUAGcCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 112787 0.66 0.986947
Target:  5'- cCAUCGcgcuggaGGACcugcuGCCCAUgcgacUGGCGUCCCc -3'
miRNA:   3'- aGUAGU-------UUUG-----CGGGUA-----GCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 111737 0.68 0.963553
Target:  5'- uUCAUCGAAguACGauuaaGUCGGCGgauUCCCGa -3'
miRNA:   3'- -AGUAGUUU--UGCggg--UAGCCGC---AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 108163 0.74 0.730173
Target:  5'- aCAUCGAGGCGCgacaCCA-CGGCGUUUCGg -3'
miRNA:   3'- aGUAGUUUUGCG----GGUaGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 102827 0.69 0.952719
Target:  5'- gUCAUCGAAagGCGCgCCggCcGCGUCCaCGg -3'
miRNA:   3'- -AGUAGUUU--UGCG-GGuaGcCGCAGG-GC- -5'
30219 3' -53.7 NC_006273.1 + 100984 0.66 0.987101
Target:  5'- uUCGUCcu--CGUCCAU-GGCGUCCa- -3'
miRNA:   3'- -AGUAGuuuuGCGGGUAgCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 100072 0.67 0.983749
Target:  5'- -uGUCAcAGGCGCCCga-GGCGUCgCa -3'
miRNA:   3'- agUAGU-UUUGCGGGuagCCGCAGgGc -5'
30219 3' -53.7 NC_006273.1 + 99280 0.75 0.720492
Target:  5'- -gGUCAAAAgcgcgaucgcCGCCCA-CGGCGUCCuCGg -3'
miRNA:   3'- agUAGUUUU----------GCGGGUaGCCGCAGG-GC- -5'
30219 3' -53.7 NC_006273.1 + 97738 0.72 0.860865
Target:  5'- aCAUCucGACGCCCGggugaCGGacgacggcaagaCGUCCCGg -3'
miRNA:   3'- aGUAGuuUUGCGGGUa----GCC------------GCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.