miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 95201 0.69 0.939444
Target:  5'- cCAUCGGc-CGCCCAgccggggUCGGCGcCUCGg -3'
miRNA:   3'- aGUAGUUuuGCGGGU-------AGCCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 88043 0.67 0.975121
Target:  5'- cCGUUAAu-CGCUgggCGUCGGCGUCCa- -3'
miRNA:   3'- aGUAGUUuuGCGG---GUAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 87853 0.69 0.939906
Target:  5'- gUCAUCGGcGCGCCCccAUCG-CcUCCCGa -3'
miRNA:   3'- -AGUAGUUuUGCGGG--UAGCcGcAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 87453 0.74 0.739774
Target:  5'- gCcgCGccGACGCUCAUCGGCGUCCg- -3'
miRNA:   3'- aGuaGUu-UUGCGGGUAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 82310 0.69 0.935183
Target:  5'- aCGUCAcGGugGuCCCGUCGGCGgacaCCa -3'
miRNA:   3'- aGUAGU-UUugC-GGGUAGCCGCag--GGc -5'
30219 3' -53.7 NC_006273.1 + 80195 0.67 0.977537
Target:  5'- ---aCAGAucGCGCaCCAauaCGGCGUCCUGc -3'
miRNA:   3'- aguaGUUU--UGCG-GGUa--GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 73120 0.66 0.989894
Target:  5'- cUCcgCAGAAgGgCCGUCGcGaGUCCCGc -3'
miRNA:   3'- -AGuaGUUUUgCgGGUAGC-CgCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 72944 0.69 0.952324
Target:  5'- uUCAUCAAccggggaucccgcAGCaGUCCGUUGGCGgagUCCGa -3'
miRNA:   3'- -AGUAGUU-------------UUG-CGGGUAGCCGCa--GGGC- -5'
30219 3' -53.7 NC_006273.1 + 66749 0.71 0.882406
Target:  5'- gUCAUCGAGACGCUgGUgcGCGaCCCGg -3'
miRNA:   3'- -AGUAGUUUUGCGGgUAgcCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 64510 0.72 0.837541
Target:  5'- -gAUCGAccCGCCCGccggcucgacaUCGGUGUCCCu -3'
miRNA:   3'- agUAGUUuuGCGGGU-----------AGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 64304 0.72 0.821082
Target:  5'- uUCuUgGAGGCGCCCugggaAUCGGCGcCCCa -3'
miRNA:   3'- -AGuAgUUUUGCGGG-----UAGCCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 56517 0.67 0.979776
Target:  5'- gUC-UCGAGAaugccgGCCCcgCGGgGUCCCc -3'
miRNA:   3'- -AGuAGUUUUg-----CGGGuaGCCgCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 56093 0.66 0.989894
Target:  5'- cUCGUCGuuGAUGCUCuggCGGCGcCgCCGg -3'
miRNA:   3'- -AGUAGUu-UUGCGGGua-GCCGCaG-GGC- -5'
30219 3' -53.7 NC_006273.1 + 55098 0.66 0.988563
Target:  5'- -gGUgGAGACGguaCCGaCGGCGUCCgCGg -3'
miRNA:   3'- agUAgUUUUGCg--GGUaGCCGCAGG-GC- -5'
30219 3' -53.7 NC_006273.1 + 52635 0.7 0.908123
Target:  5'- -aGUCcuGAGAgGCCC-UCGGCGUCCa- -3'
miRNA:   3'- agUAG--UUUUgCGGGuAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 47223 0.69 0.939906
Target:  5'- cCAUgGAugUGCCCGacccggaacUCGGCGaCCCGg -3'
miRNA:   3'- aGUAgUUuuGCGGGU---------AGCCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 45235 0.68 0.966743
Target:  5'- ---cCAAuACGgUCAUcgaCGGCGUCCCGg -3'
miRNA:   3'- aguaGUUuUGCgGGUA---GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 44885 0.7 0.925047
Target:  5'- uUCAUUAuAACGCCaCGUCGGag-CCCu -3'
miRNA:   3'- -AGUAGUuUUGCGG-GUAGCCgcaGGGc -5'
30219 3' -53.7 NC_006273.1 + 42707 0.69 0.948672
Target:  5'- gCGUUGAccAGCGCCgUGUUGGCGUgCCGg -3'
miRNA:   3'- aGUAGUU--UUGCGG-GUAGCCGCAgGGC- -5'
30219 3' -53.7 NC_006273.1 + 41191 0.66 0.988563
Target:  5'- -gGUCccuuaaaGCCCAaaccucaucagCGGCGUCCCGa -3'
miRNA:   3'- agUAGuuuug--CGGGUa----------GCCGCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.