miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 87453 0.74 0.739774
Target:  5'- gCcgCGccGACGCUCAUCGGCGUCCg- -3'
miRNA:   3'- aGuaGUu-UUGCGGGUAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 73120 0.66 0.989894
Target:  5'- cUCcgCAGAAgGgCCGUCGcGaGUCCCGc -3'
miRNA:   3'- -AGuaGUUUUgCgGGUAGC-CgCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 100072 0.67 0.983749
Target:  5'- -uGUCAcAGGCGCCCga-GGCGUCgCa -3'
miRNA:   3'- agUAGU-UUUGCGGGuagCCGCAGgGc -5'
30219 3' -53.7 NC_006273.1 + 108163 0.74 0.730173
Target:  5'- aCAUCGAGGCGCgacaCCA-CGGCGUUUCGg -3'
miRNA:   3'- aGUAGUUUUGCG----GGUaGCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 40664 0.66 0.9911
Target:  5'- aCAUaaguaaGCgCGUCGGCGUCCUc -3'
miRNA:   3'- aGUAguuuugCGgGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 99280 0.75 0.720492
Target:  5'- -gGUCAAAAgcgcgaucgcCGCCCA-CGGCGUCCuCGg -3'
miRNA:   3'- agUAGUUUU----------GCGGGUaGCCGCAGG-GC- -5'
30219 3' -53.7 NC_006273.1 + 26589 0.76 0.631095
Target:  5'- gCGcCAcAGCGCCCAUCGGCGUUUCc -3'
miRNA:   3'- aGUaGUuUUGCGGGUAGCCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 184914 0.71 0.875433
Target:  5'- uUCAUCAGccuAugGCCUuugaCGGCGUCCa- -3'
miRNA:   3'- -AGUAGUU---UugCGGGua--GCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 212401 0.67 0.977537
Target:  5'- cCGUCGAuGCGUCCGccguguuucUCGGCGUacugcugcaCCCa -3'
miRNA:   3'- aGUAGUUuUGCGGGU---------AGCCGCA---------GGGc -5'
30219 3' -53.7 NC_006273.1 + 80195 0.67 0.977537
Target:  5'- ---aCAGAucGCGCaCCAauaCGGCGUCCUGc -3'
miRNA:   3'- aguaGUUU--UGCG-GGUa--GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 38917 0.69 0.944402
Target:  5'- aCGU-GGGACGCCCAaggCGGCGUacgCCGa -3'
miRNA:   3'- aGUAgUUUUGCGGGUa--GCCGCAg--GGC- -5'
30219 3' -53.7 NC_006273.1 + 95201 0.69 0.939444
Target:  5'- cCAUCGGc-CGCCCAgccggggUCGGCGcCUCGg -3'
miRNA:   3'- aGUAGUUuuGCGGGU-------AGCCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 33869 0.69 0.939444
Target:  5'- gUCGUCGAccAGCGUCUgcgaccaGUCGGCGaagCCCa -3'
miRNA:   3'- -AGUAGUU--UUGCGGG-------UAGCCGCa--GGGc -5'
30219 3' -53.7 NC_006273.1 + 82310 0.69 0.935183
Target:  5'- aCGUCAcGGugGuCCCGUCGGCGgacaCCa -3'
miRNA:   3'- aGUAGU-UUugC-GGGUAGCCGCag--GGc -5'
30219 3' -53.7 NC_006273.1 + 97738 0.72 0.860865
Target:  5'- aCAUCucGACGCCCGggugaCGGacgacggcaagaCGUCCCGg -3'
miRNA:   3'- aGUAGuuUUGCGGGUa----GCC------------GCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 176130 0.67 0.972521
Target:  5'- cCAUCAauaggGAACGCugCCAgCGGCG-CCCa -3'
miRNA:   3'- aGUAGU-----UUUGCG--GGUaGCCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 201066 0.67 0.975121
Target:  5'- aCGUCAGu-CGCCCAcccccauuacaCGGCGauaUCCCGa -3'
miRNA:   3'- aGUAGUUuuGCGGGUa----------GCCGC---AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 142490 0.67 0.975121
Target:  5'- aUCAUCAccACGUCCAUCcGCGgCCUu -3'
miRNA:   3'- -AGUAGUuuUGCGGGUAGcCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 22279 0.67 0.975121
Target:  5'- cCGUCGGuGCGCUCAUCuGCGgcagcgguaCCCGa -3'
miRNA:   3'- aGUAGUUuUGCGGGUAGcCGCa--------GGGC- -5'
30219 3' -53.7 NC_006273.1 + 88043 0.67 0.975121
Target:  5'- cCGUUAAu-CGCUgggCGUCGGCGUCCa- -3'
miRNA:   3'- aGUAGUUuuGCGG---GUAGCCGCAGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.