miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 3' -53.7 NC_006273.1 + 191513 0.66 0.9911
Target:  5'- gCGUUGucuCGCCUAUCaGCGUUCCu -3'
miRNA:   3'- aGUAGUuuuGCGGGUAGcCGCAGGGc -5'
30219 3' -53.7 NC_006273.1 + 56093 0.66 0.989894
Target:  5'- cUCGUCGuuGAUGCUCuggCGGCGcCgCCGg -3'
miRNA:   3'- -AGUAGUu-UUGCGGGua-GCCGCaG-GGC- -5'
30219 3' -53.7 NC_006273.1 + 40491 0.66 0.988702
Target:  5'- -gGUCGAGGCgGCCCGgcugcugccggacaGGCGaCCCGg -3'
miRNA:   3'- agUAGUUUUG-CGGGUag------------CCGCaGGGC- -5'
30219 3' -53.7 NC_006273.1 + 190477 0.68 0.963553
Target:  5'- aUCGUgGGAACGcCCCAUUGGCauugCCaCGa -3'
miRNA:   3'- -AGUAgUUUUGC-GGGUAGCCGca--GG-GC- -5'
30219 3' -53.7 NC_006273.1 + 190594 0.68 0.963553
Target:  5'- aCGUCcgccGGCGCCCAUCGGCcgcgcgaucUCCUa -3'
miRNA:   3'- aGUAGuu--UUGCGGGUAGCCGc--------AGGGc -5'
30219 3' -53.7 NC_006273.1 + 176130 0.67 0.972521
Target:  5'- cCAUCAauaggGAACGCugCCAgCGGCG-CCCa -3'
miRNA:   3'- aGUAGU-----UUUGCG--GGUaGCCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 201066 0.67 0.975121
Target:  5'- aCGUCAGu-CGCCCAcccccauuacaCGGCGauaUCCCGa -3'
miRNA:   3'- aGUAGUUuuGCGGGUa----------GCCGC---AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 142490 0.67 0.975121
Target:  5'- aUCAUCAccACGUCCAUCcGCGgCCUu -3'
miRNA:   3'- -AGUAGUuuUGCGGGUAGcCGCaGGGc -5'
30219 3' -53.7 NC_006273.1 + 22279 0.67 0.975121
Target:  5'- cCGUCGGuGCGCUCAUCuGCGgcagcgguaCCCGa -3'
miRNA:   3'- aGUAGUUuUGCGGGUAGcCGCa--------GGGC- -5'
30219 3' -53.7 NC_006273.1 + 88043 0.67 0.975121
Target:  5'- cCGUUAAu-CGCUgggCGUCGGCGUCCa- -3'
miRNA:   3'- aGUAGUUuuGCGG---GUAGCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 80195 0.67 0.977537
Target:  5'- ---aCAGAucGCGCaCCAauaCGGCGUCCUGc -3'
miRNA:   3'- aguaGUUU--UGCG-GGUa--GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 212401 0.67 0.977537
Target:  5'- cCGUCGAuGCGUCCGccguguuucUCGGCGUacugcugcaCCCa -3'
miRNA:   3'- aGUAGUUuUGCGGGU---------AGCCGCA---------GGGc -5'
30219 3' -53.7 NC_006273.1 + 111737 0.68 0.963553
Target:  5'- uUCAUCGAAguACGauuaaGUCGGCGgauUCCCGa -3'
miRNA:   3'- -AGUAGUUU--UGCggg--UAGCCGC---AGGGC- -5'
30219 3' -53.7 NC_006273.1 + 33089 0.68 0.963553
Target:  5'- gUCAUCGccGCGCCuCGUCGGuCGaugacCCCa -3'
miRNA:   3'- -AGUAGUuuUGCGG-GUAGCC-GCa----GGGc -5'
30219 3' -53.7 NC_006273.1 + 209264 0.69 0.952719
Target:  5'- -uGUCGGgaccgcAGCGCCCggCGGCGUaUCCGc -3'
miRNA:   3'- agUAGUU------UUGCGGGuaGCCGCA-GGGC- -5'
30219 3' -53.7 NC_006273.1 + 100984 0.66 0.987101
Target:  5'- uUCGUCcu--CGUCCAU-GGCGUCCa- -3'
miRNA:   3'- -AGUAGuuuuGCGGGUAgCCGCAGGgc -5'
30219 3' -53.7 NC_006273.1 + 134421 0.66 0.987101
Target:  5'- cCAUgAAAGCGCCCGgcauaaacaugUUGGcCGUCuuGc -3'
miRNA:   3'- aGUAgUUUUGCGGGU-----------AGCC-GCAGggC- -5'
30219 3' -53.7 NC_006273.1 + 220243 0.66 0.987101
Target:  5'- cCA-CAAAacuGCGuCCCGgccgCGGaCGUCCCGu -3'
miRNA:   3'- aGUaGUUU---UGC-GGGUa---GCC-GCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 41191 0.66 0.988563
Target:  5'- -gGUCccuuaaaGCCCAaaccucaucagCGGCGUCCCGa -3'
miRNA:   3'- agUAGuuuug--CGGGUa----------GCCGCAGGGC- -5'
30219 3' -53.7 NC_006273.1 + 55098 0.66 0.988563
Target:  5'- -gGUgGAGACGguaCCGaCGGCGUCCgCGg -3'
miRNA:   3'- agUAgUUUUGCg--GGUaGCCGCAGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.