Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30219 | 3' | -53.7 | NC_006273.1 | + | 125270 | 0.67 | 0.979776 |
Target: 5'- gCGUCAGAGCGagCGUgGcGCGUCCgGg -3' miRNA: 3'- aGUAGUUUUGCggGUAgC-CGCAGGgC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 164458 | 0.67 | 0.979776 |
Target: 5'- gCGUC---GCGCCCA--GGCGUCCa- -3' miRNA: 3'- aGUAGuuuUGCGGGUagCCGCAGGgc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 212401 | 0.67 | 0.977537 |
Target: 5'- cCGUCGAuGCGUCCGccguguuucUCGGCGUacugcugcaCCCa -3' miRNA: 3'- aGUAGUUuUGCGGGU---------AGCCGCA---------GGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 80195 | 0.67 | 0.977537 |
Target: 5'- ---aCAGAucGCGCaCCAauaCGGCGUCCUGc -3' miRNA: 3'- aguaGUUU--UGCG-GGUa--GCCGCAGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 22279 | 0.67 | 0.975121 |
Target: 5'- cCGUCGGuGCGCUCAUCuGCGgcagcgguaCCCGa -3' miRNA: 3'- aGUAGUUuUGCGGGUAGcCGCa--------GGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 142490 | 0.67 | 0.975121 |
Target: 5'- aUCAUCAccACGUCCAUCcGCGgCCUu -3' miRNA: 3'- -AGUAGUuuUGCGGGUAGcCGCaGGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 201066 | 0.67 | 0.975121 |
Target: 5'- aCGUCAGu-CGCCCAcccccauuacaCGGCGauaUCCCGa -3' miRNA: 3'- aGUAGUUuuGCGGGUa----------GCCGC---AGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 176130 | 0.67 | 0.972521 |
Target: 5'- cCAUCAauaggGAACGCugCCAgCGGCG-CCCa -3' miRNA: 3'- aGUAGU-----UUUGCG--GGUaGCCGCaGGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 190594 | 0.68 | 0.963553 |
Target: 5'- aCGUCcgccGGCGCCCAUCGGCcgcgcgaucUCCUa -3' miRNA: 3'- aGUAGuu--UUGCGGGUAGCCGc--------AGGGc -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 190477 | 0.68 | 0.963553 |
Target: 5'- aUCGUgGGAACGcCCCAUUGGCauugCCaCGa -3' miRNA: 3'- -AGUAgUUUUGC-GGGUAGCCGca--GG-GC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 131249 | 0.68 | 0.963553 |
Target: 5'- cUCGUCcau-CGCCgCGUCGG-GUCUCGg -3' miRNA: 3'- -AGUAGuuuuGCGG-GUAGCCgCAGGGC- -5' |
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30219 | 3' | -53.7 | NC_006273.1 | + | 205221 | 1.1 | 0.006568 |
Target: 5'- uUCAUCAAAACGCCCAUCGGCGUCCCGg -3' miRNA: 3'- -AGUAGUUUUGCGGGUAGCCGCAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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