miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 5' -51.5 NC_006273.1 + 64695 0.66 0.997561
Target:  5'- gACCGaGGCGCugGAcGCcaUCAUGGa- -3'
miRNA:   3'- -UGGC-CCGUGugCUuCGcaAGUAUUgu -5'
30219 5' -51.5 NC_006273.1 + 8826 0.66 0.997561
Target:  5'- gGCCuGGgGCGCGGGcuCGUUCGUGGCc -3'
miRNA:   3'- -UGGcCCgUGUGCUUc-GCAAGUAUUGu -5'
30219 5' -51.5 NC_006273.1 + 55230 0.66 0.997561
Target:  5'- uCUGGGCACACuAAGCGcUCugGUGugGu -3'
miRNA:   3'- uGGCCCGUGUGcUUCGCaAG--UAUugU- -5'
30219 5' -51.5 NC_006273.1 + 20929 0.66 0.997561
Target:  5'- uACgGGGCugGCGuuucuAGGUGgcCGUGACGa -3'
miRNA:   3'- -UGgCCCGugUGC-----UUCGCaaGUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 117840 0.66 0.99712
Target:  5'- cGCCGGGaUACAUGAcgGGCGcugCcgAGCGa -3'
miRNA:   3'- -UGGCCC-GUGUGCU--UCGCaa-GuaUUGU- -5'
30219 5' -51.5 NC_006273.1 + 71065 0.66 0.99712
Target:  5'- cGCCGGGaGCAUcuGGUGUUCAUGc-- -3'
miRNA:   3'- -UGGCCCgUGUGcuUCGCAAGUAUugu -5'
30219 5' -51.5 NC_006273.1 + 100076 0.66 0.99712
Target:  5'- -aCaGGCGCcCGAGGCGUcgcaCAUGACGu -3'
miRNA:   3'- ugGcCCGUGuGCUUCGCAa---GUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 156290 0.66 0.996041
Target:  5'- -aCGGGgACACGGacAGCGUguuuguccgcuuUCGUGGCc -3'
miRNA:   3'- ugGCCCgUGUGCU--UCGCA------------AGUAUUGu -5'
30219 5' -51.5 NC_006273.1 + 120826 0.66 0.995659
Target:  5'- uUCGGGCGCgACGGuggacucggccuuaaGGCGgccgcgugUCAUAACGc -3'
miRNA:   3'- uGGCCCGUG-UGCU---------------UCGCa-------AGUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 58135 0.67 0.99465
Target:  5'- -aCGGGCACGCGcAGCGgcCuccGCAc -3'
miRNA:   3'- ugGCCCGUGUGCuUCGCaaGuauUGU- -5'
30219 5' -51.5 NC_006273.1 + 186147 0.67 0.99465
Target:  5'- cGCUGGGC-CACGAGGUGc-CAgAACGc -3'
miRNA:   3'- -UGGCCCGuGUGCUUCGCaaGUaUUGU- -5'
30219 5' -51.5 NC_006273.1 + 76274 0.67 0.993819
Target:  5'- gGCgGuGGCACcaGCGggGgGUUCAgcgagAGCAc -3'
miRNA:   3'- -UGgC-CCGUG--UGCuuCgCAAGUa----UUGU- -5'
30219 5' -51.5 NC_006273.1 + 146824 0.67 0.993731
Target:  5'- cACUGuGGCGCgugaaucguugguACGGAGCGUUUuugAGCAu -3'
miRNA:   3'- -UGGC-CCGUG-------------UGCUUCGCAAGua-UUGU- -5'
30219 5' -51.5 NC_006273.1 + 94390 0.67 0.992888
Target:  5'- gGCCGGGCAC-CGGGcGCGgcccgcUCcgGACc -3'
miRNA:   3'- -UGGCCCGUGuGCUU-CGCa-----AGuaUUGu -5'
30219 5' -51.5 NC_006273.1 + 46314 0.68 0.986435
Target:  5'- cCCGGGCGCAaGAAGCGgcCGccuACGc -3'
miRNA:   3'- uGGCCCGUGUgCUUCGCaaGUau-UGU- -5'
30219 5' -51.5 NC_006273.1 + 1021 0.68 0.984726
Target:  5'- cGCCGGGgACGgGggGUGUgCGggGACGg -3'
miRNA:   3'- -UGGCCCgUGUgCuuCGCAaGUa-UUGU- -5'
30219 5' -51.5 NC_006273.1 + 53787 0.68 0.984726
Target:  5'- uAUgGGGCAUACGccGUGUUgAUGGCu -3'
miRNA:   3'- -UGgCCCGUGUGCuuCGCAAgUAUUGu -5'
30219 5' -51.5 NC_006273.1 + 40959 0.68 0.984726
Target:  5'- cGCCGGGgACGgGggGUGUgCGggGACGg -3'
miRNA:   3'- -UGGCCCgUGUgCuuCGCAaGUa-UUGU- -5'
30219 5' -51.5 NC_006273.1 + 48644 0.69 0.980822
Target:  5'- cGCCGucGGCGCACGcAGCGgUCGcagGACGg -3'
miRNA:   3'- -UGGC--CCGUGUGCuUCGCaAGUa--UUGU- -5'
30219 5' -51.5 NC_006273.1 + 119938 0.69 0.980822
Target:  5'- -aCGGGCACGCGGuccAGCGg-CAgcGCAa -3'
miRNA:   3'- ugGCCCGUGUGCU---UCGCaaGUauUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.