miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30219 5' -51.5 NC_006273.1 + 205256 1.09 0.011995
Target:  5'- uACCGGGCACACGAAGCGUUCAUAACAa -3'
miRNA:   3'- -UGGCCCGUGUGCUUCGCAAGUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 104948 0.77 0.674555
Target:  5'- uGCuCGGGCAaGCGAAGCGccaUCAUGACGc -3'
miRNA:   3'- -UG-GCCCGUgUGCUUCGCa--AGUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 125259 0.76 0.754433
Target:  5'- cACCGGGCGCgGCGucaGAGCGagCGUGGCGc -3'
miRNA:   3'- -UGGCCCGUG-UGC---UUCGCaaGUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 132407 0.75 0.782845
Target:  5'- cGCCGGGUugGCACGAcgcGGCGUUguUAAUg -3'
miRNA:   3'- -UGGCCCG--UGUGCU---UCGCAAguAUUGu -5'
30219 5' -51.5 NC_006273.1 + 79955 0.73 0.894931
Target:  5'- cGCCGGGCACggcgGCGGuagagaugauagcGGCGUUagGUGACAc -3'
miRNA:   3'- -UGGCCCGUG----UGCU-------------UCGCAAg-UAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 26842 0.73 0.895592
Target:  5'- aACCGGGUACAUGggGgGgaacaUCGUccAGCAg -3'
miRNA:   3'- -UGGCCCGUGUGCuuCgCa----AGUA--UUGU- -5'
30219 5' -51.5 NC_006273.1 + 215671 0.71 0.932966
Target:  5'- gACCGGGCuaucuggaccugacCGCGGAGCGa-CAUGGCGg -3'
miRNA:   3'- -UGGCCCGu-------------GUGCUUCGCaaGUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 63765 0.71 0.935964
Target:  5'- gGCCGGGCGCGCcucucgGAGGaCGg-CGUGACGg -3'
miRNA:   3'- -UGGCCCGUGUG------CUUC-GCaaGUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 81156 0.71 0.940768
Target:  5'- aGCUGGGCggccGCACGAAGCGguccaCGUAGg- -3'
miRNA:   3'- -UGGCCCG----UGUGCUUCGCaa---GUAUUgu -5'
30219 5' -51.5 NC_006273.1 + 40639 0.71 0.940768
Target:  5'- gACaGGGCugAgGGAGUGUUgCGUGACAu -3'
miRNA:   3'- -UGgCCCGugUgCUUCGCAA-GUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 701 0.71 0.940768
Target:  5'- gACaGGGCugAgGGAGUGUUgCGUGACAu -3'
miRNA:   3'- -UGgCCCGugUgCUUCGCAA-GUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 2217 0.71 0.94966
Target:  5'- cGCUGGGCACgACGcGGUGaaCGUGGCGc -3'
miRNA:   3'- -UGGCCCGUG-UGCuUCGCaaGUAUUGU- -5'
30219 5' -51.5 NC_006273.1 + 117987 0.7 0.957241
Target:  5'- gGCCGGGCACGa-AAGCGUcuaaaaagucacgUCAaUAGCGa -3'
miRNA:   3'- -UGGCCCGUGUgcUUCGCA-------------AGU-AUUGU- -5'
30219 5' -51.5 NC_006273.1 + 190147 0.7 0.957617
Target:  5'- cGCCGGGCgGCACGGgcaAGUGcUUCAgcaGCAg -3'
miRNA:   3'- -UGGCCCG-UGUGCU---UCGC-AAGUau-UGU- -5'
30219 5' -51.5 NC_006273.1 + 27966 0.7 0.967864
Target:  5'- uGCCGGGUACcUGAAGCcccgacgacuGUUCGUcgAGCAc -3'
miRNA:   3'- -UGGCCCGUGuGCUUCG----------CAAGUA--UUGU- -5'
30219 5' -51.5 NC_006273.1 + 87902 0.7 0.967864
Target:  5'- cGCCGGGCACGcCGAAGCa--------- -3'
miRNA:   3'- -UGGCCCGUGU-GCUUCGcaaguauugu -5'
30219 5' -51.5 NC_006273.1 + 46883 0.69 0.973633
Target:  5'- cACCGGGUACGCGAcGCGcUgGgguGCGc -3'
miRNA:   3'- -UGGCCCGUGUGCUuCGCaAgUau-UGU- -5'
30219 5' -51.5 NC_006273.1 + 48644 0.69 0.980822
Target:  5'- cGCCGucGGCGCACGcAGCGgUCGcagGACGg -3'
miRNA:   3'- -UGGC--CCGUGUGCuUCGCaAGUa--UUGU- -5'
30219 5' -51.5 NC_006273.1 + 119938 0.69 0.980822
Target:  5'- -aCGGGCACGCGGuccAGCGg-CAgcGCAa -3'
miRNA:   3'- ugGCCCGUGUGCU---UCGCaaGUauUGU- -5'
30219 5' -51.5 NC_006273.1 + 1021 0.68 0.984726
Target:  5'- cGCCGGGgACGgGggGUGUgCGggGACGg -3'
miRNA:   3'- -UGGCCCgUGUgCuuCGCAaGUa-UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.