miRNA display CGI


Results 1 - 20 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 71064 0.66 0.999703
Target:  5'- gCGCCGggagCAUCuGGUGUUcauGCUgugggGCGCCg -3'
miRNA:   3'- gGUGGUa---GUAG-UCGCAAu--UGA-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 33417 0.66 0.999703
Target:  5'- aCCGCCucgggCGUCGGCG---GC-GCGCg -3'
miRNA:   3'- -GGUGGua---GUAGUCGCaauUGaCGCGg -5'
30220 3' -50 NC_006273.1 + 79909 0.66 0.999703
Target:  5'- -aGCCcUCG--AGCGUguacguCUGCGCCg -3'
miRNA:   3'- ggUGGuAGUagUCGCAauu---GACGCGG- -5'
30220 3' -50 NC_006273.1 + 199617 0.66 0.999703
Target:  5'- uCgGCC-UCGUCAGUGUguACgaaugcGUGCCg -3'
miRNA:   3'- -GgUGGuAGUAGUCGCAauUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 193809 0.66 0.999696
Target:  5'- aCCACCG-CGUacaAGUucgagcaaccgacGUUGACguucgGCGCCg -3'
miRNA:   3'- -GGUGGUaGUAg--UCG-------------CAAUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 65092 0.66 0.999682
Target:  5'- uCCAUCAggugcugauggugcUCAcgggcuUCGGCGUgcaGCUGuCGCCc -3'
miRNA:   3'- -GGUGGU--------------AGU------AGUCGCAau-UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 57703 0.66 0.999636
Target:  5'- gCGCCAgCGUCGGCGgcuccgagagGCGCg -3'
miRNA:   3'- gGUGGUaGUAGUCGCaauuga----CGCGg -5'
30220 3' -50 NC_006273.1 + 234011 0.66 0.999628
Target:  5'- uCCACgCGUCccgCGGCGacAGCUGaCGCa -3'
miRNA:   3'- -GGUG-GUAGua-GUCGCaaUUGAC-GCGg -5'
30220 3' -50 NC_006273.1 + 23351 0.66 0.999628
Target:  5'- cCC-CCAgcgacugUGUCAGCG---GCUGCGCa -3'
miRNA:   3'- -GGuGGUa------GUAGUCGCaauUGACGCGg -5'
30220 3' -50 NC_006273.1 + 117767 0.66 0.999628
Target:  5'- gCCACCAUCAcCGGCcuaUUAcCgucgGCGCg -3'
miRNA:   3'- -GGUGGUAGUaGUCGc--AAUuGa---CGCGg -5'
30220 3' -50 NC_006273.1 + 130204 0.66 0.999628
Target:  5'- aCCGCCGUC-UCcggcuaccugGGCGaggccGCgGCGCCg -3'
miRNA:   3'- -GGUGGUAGuAG----------UCGCaau--UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 39118 0.66 0.999628
Target:  5'- uCCACgCGUCccgCGGCGacAGCUGaCGCa -3'
miRNA:   3'- -GGUG-GUAGua-GUCGCaaUUGAC-GCGg -5'
30220 3' -50 NC_006273.1 + 64025 0.66 0.999628
Target:  5'- gCCACCAUgGgcgCGGCGguuuuggUGGC-GCgGCCu -3'
miRNA:   3'- -GGUGGUAgUa--GUCGCa------AUUGaCG-CGG- -5'
30220 3' -50 NC_006273.1 + 197181 0.66 0.999628
Target:  5'- uCCGCCGUCuccggAUgAGCGgccGCgGCGCg -3'
miRNA:   3'- -GGUGGUAG-----UAgUCGCaauUGaCGCGg -5'
30220 3' -50 NC_006273.1 + 112435 0.66 0.99962
Target:  5'- aCCACCguGUCGUCcGCGUUcgucguccccaggGACcgGCGUg -3'
miRNA:   3'- -GGUGG--UAGUAGuCGCAA-------------UUGa-CGCGg -5'
30220 3' -50 NC_006273.1 + 128612 0.66 0.999576
Target:  5'- uCCAUCAUCcuagccgagaaauccGUCAauauGCGUU-ACUGCGUg -3'
miRNA:   3'- -GGUGGUAG---------------UAGU----CGCAAuUGACGCGg -5'
30220 3' -50 NC_006273.1 + 196989 0.66 0.999537
Target:  5'- gCCACCG-CAgCGGCGgcGACggacgGCGgCg -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaaUUGa----CGCgG- -5'
30220 3' -50 NC_006273.1 + 61400 0.66 0.999537
Target:  5'- cCCGucuCCAUgCGgaugagCAGCGcgcccGGCUGCGCCu -3'
miRNA:   3'- -GGU---GGUA-GUa-----GUCGCaa---UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 70937 0.66 0.999537
Target:  5'- aCAUCGUCAUCgAGCG---GCcGCgGCCg -3'
miRNA:   3'- gGUGGUAGUAG-UCGCaauUGaCG-CGG- -5'
30220 3' -50 NC_006273.1 + 192018 0.66 0.999537
Target:  5'- aCGCCAUCAggagaugguggaUCAGCGUUGccauCGUCa -3'
miRNA:   3'- gGUGGUAGU------------AGUCGCAAUugacGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.