miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 227341 0.66 0.999238
Target:  5'- gCGCCGUCAagcugugucuUCGGCGcauguuggguCUGcCGCCg -3'
miRNA:   3'- gGUGGUAGU----------AGUCGCaauu------GAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 34102 0.66 0.999428
Target:  5'- aCCGCCGUCGUC-GCGcccgu--CGCCg -3'
miRNA:   3'- -GGUGGUAGUAGuCGCaauugacGCGG- -5'
30220 3' -50 NC_006273.1 + 23351 0.66 0.999628
Target:  5'- cCC-CCAgcgacugUGUCAGCG---GCUGCGCa -3'
miRNA:   3'- -GGuGGUa------GUAGUCGCaauUGACGCGg -5'
30220 3' -50 NC_006273.1 + 192018 0.66 0.999537
Target:  5'- aCGCCAUCAggagaugguggaUCAGCGUUGccauCGUCa -3'
miRNA:   3'- gGUGGUAGU------------AGUCGCAAUugacGCGG- -5'
30220 3' -50 NC_006273.1 + 22275 0.66 0.999297
Target:  5'- uCCGCCGUCGgu-GCGcucauCUGCGgCa -3'
miRNA:   3'- -GGUGGUAGUaguCGCaauu-GACGCgG- -5'
30220 3' -50 NC_006273.1 + 176145 0.66 0.999517
Target:  5'- gCUGCCAg---CGGCGcccagcagguACUGCGCCu -3'
miRNA:   3'- -GGUGGUaguaGUCGCaau-------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 70937 0.66 0.999537
Target:  5'- aCAUCGUCAUCgAGCG---GCcGCgGCCg -3'
miRNA:   3'- gGUGGUAGUAG-UCGCaauUGaCG-CGG- -5'
30220 3' -50 NC_006273.1 + 199617 0.66 0.999703
Target:  5'- uCgGCC-UCGUCAGUGUguACgaaugcGUGCCg -3'
miRNA:   3'- -GgUGGuAGUAGUCGCAauUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 43325 0.66 0.999428
Target:  5'- -aAgCGUCGUC-GCcccgGACUGCGCCc -3'
miRNA:   3'- ggUgGUAGUAGuCGcaa-UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 169264 0.66 0.999339
Target:  5'- aCCACUugcgucaauaugacgAUCAuaaaggcUCGGUGaucGCUGCGCCu -3'
miRNA:   3'- -GGUGG---------------UAGU-------AGUCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 73649 0.66 0.999297
Target:  5'- uCCuCCucuUCAUCAGCGUcucccucGCuUGCGCa -3'
miRNA:   3'- -GGuGGu--AGUAGUCGCAau-----UG-ACGCGg -5'
30220 3' -50 NC_006273.1 + 131111 0.66 0.999428
Target:  5'- -aGCCGUg--CAGCGUUAc--GCGCCg -3'
miRNA:   3'- ggUGGUAguaGUCGCAAUugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 195894 0.66 0.999339
Target:  5'- gCGaCGUCAaCAGCGggcacuggugcgaguGCUGCGCCu -3'
miRNA:   3'- gGUgGUAGUaGUCGCaau------------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 117767 0.66 0.999628
Target:  5'- gCCACCAUCAcCGGCcuaUUAcCgucgGCGCg -3'
miRNA:   3'- -GGUGGUAGUaGUCGc--AAUuGa---CGCGg -5'
30220 3' -50 NC_006273.1 + 64104 0.66 0.999428
Target:  5'- gCGCCGUCGUUAccGCGgugcAACgcGCGCUa -3'
miRNA:   3'- gGUGGUAGUAGU--CGCaa--UUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 228572 0.66 0.999297
Target:  5'- uCCACa--CAUCAGC--UGAUUGUGCUg -3'
miRNA:   3'- -GGUGguaGUAGUCGcaAUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 112435 0.66 0.99962
Target:  5'- aCCACCguGUCGUCcGCGUUcgucguccccaggGACcgGCGUg -3'
miRNA:   3'- -GGUGG--UAGUAGuCGCAA-------------UUGa-CGCGg -5'
30220 3' -50 NC_006273.1 + 197915 0.66 0.999537
Target:  5'- gCCACCAggUCAUCc-CGUUG--UGCGCg -3'
miRNA:   3'- -GGUGGU--AGUAGucGCAAUugACGCGg -5'
30220 3' -50 NC_006273.1 + 141724 0.66 0.999537
Target:  5'- gCCGCCAuugcgUCGUCccAGCag-GGC-GCGCCg -3'
miRNA:   3'- -GGUGGU-----AGUAG--UCGcaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 61400 0.66 0.999537
Target:  5'- cCCGucuCCAUgCGgaugagCAGCGcgcccGGCUGCGCCu -3'
miRNA:   3'- -GGU---GGUA-GUa-----GUCGCaa---UUGACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.