Results 21 - 40 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30220 | 3' | -50 | NC_006273.1 | + | 195894 | 0.66 | 0.999339 |
Target: 5'- gCGaCGUCAaCAGCGggcacuggugcgaguGCUGCGCCu -3' miRNA: 3'- gGUgGUAGUaGUCGCaau------------UGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 131111 | 0.66 | 0.999428 |
Target: 5'- -aGCCGUg--CAGCGUUAc--GCGCCg -3' miRNA: 3'- ggUGGUAguaGUCGCAAUugaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 33417 | 0.66 | 0.999703 |
Target: 5'- aCCGCCucgggCGUCGGCG---GC-GCGCg -3' miRNA: 3'- -GGUGGua---GUAGUCGCaauUGaCGCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 64025 | 0.66 | 0.999628 |
Target: 5'- gCCACCAUgGgcgCGGCGguuuuggUGGC-GCgGCCu -3' miRNA: 3'- -GGUGGUAgUa--GUCGCa------AUUGaCG-CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 1001 | 0.66 | 0.999339 |
Target: 5'- gCGaCGUCAaCAGCGggcacuggugcgaguGCUGCGCCu -3' miRNA: 3'- gGUgGUAGUaGUCGCaau------------UGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 193809 | 0.66 | 0.999696 |
Target: 5'- aCCACCG-CGUacaAGUucgagcaaccgacGUUGACguucgGCGCCg -3' miRNA: 3'- -GGUGGUaGUAg--UCG-------------CAAUUGa----CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 39118 | 0.66 | 0.999628 |
Target: 5'- uCCACgCGUCccgCGGCGacAGCUGaCGCa -3' miRNA: 3'- -GGUG-GUAGua-GUCGCaaUUGAC-GCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 23351 | 0.66 | 0.999628 |
Target: 5'- cCC-CCAgcgacugUGUCAGCG---GCUGCGCa -3' miRNA: 3'- -GGuGGUa------GUAGUCGCaauUGACGCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 57703 | 0.66 | 0.999636 |
Target: 5'- gCGCCAgCGUCGGCGgcuccgagagGCGCg -3' miRNA: 3'- gGUGGUaGUAGUCGCaauuga----CGCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 234011 | 0.66 | 0.999628 |
Target: 5'- uCCACgCGUCccgCGGCGacAGCUGaCGCa -3' miRNA: 3'- -GGUG-GUAGua-GUCGCaaUUGAC-GCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 58662 | 0.66 | 0.999428 |
Target: 5'- aCGCCGUUcuugaCGGCGUUGugGCUGCuauugggucacaGCCg -3' miRNA: 3'- gGUGGUAGua---GUCGCAAU--UGACG------------CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 199617 | 0.66 | 0.999703 |
Target: 5'- uCgGCC-UCGUCAGUGUguACgaaugcGUGCCg -3' miRNA: 3'- -GgUGGuAGUAGUCGCAauUGa-----CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 70937 | 0.66 | 0.999537 |
Target: 5'- aCAUCGUCAUCgAGCG---GCcGCgGCCg -3' miRNA: 3'- gGUGGUAGUAG-UCGCaauUGaCG-CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 169264 | 0.66 | 0.999339 |
Target: 5'- aCCACUugcgucaauaugacgAUCAuaaaggcUCGGUGaucGCUGCGCCu -3' miRNA: 3'- -GGUGG---------------UAGU-------AGUCGCaauUGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 194652 | 0.66 | 0.999297 |
Target: 5'- -aGCCGUCAgccUCGGCGUccguuUUGuCGCCc -3' miRNA: 3'- ggUGGUAGU---AGUCGCAauu--GAC-GCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 128612 | 0.66 | 0.999576 |
Target: 5'- uCCAUCAUCcuagccgagaaauccGUCAauauGCGUU-ACUGCGUg -3' miRNA: 3'- -GGUGGUAG---------------UAGU----CGCAAuUGACGCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 161935 | 0.66 | 0.999428 |
Target: 5'- gCUACCAUUAUgcagcaCGGCGaggcuucGGCUGgCGCCa -3' miRNA: 3'- -GGUGGUAGUA------GUCGCaa-----UUGAC-GCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 34102 | 0.66 | 0.999428 |
Target: 5'- aCCGCCGUCGUC-GCGcccgu--CGCCg -3' miRNA: 3'- -GGUGGUAGUAGuCGCaauugacGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 164557 | 0.66 | 0.999537 |
Target: 5'- gUACCGg---CGGUGUUGgaGCgGCGCCa -3' miRNA: 3'- gGUGGUaguaGUCGCAAU--UGaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 65092 | 0.66 | 0.999682 |
Target: 5'- uCCAUCAggugcugauggugcUCAcgggcuUCGGCGUgcaGCUGuCGCCc -3' miRNA: 3'- -GGUGGU--------------AGU------AGUCGCAau-UGAC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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