miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 68982 0.66 0.999428
Target:  5'- cCCACCAcgguuuccUCgGUCAGCaaucUGACguccaGCGCCa -3'
miRNA:   3'- -GGUGGU--------AG-UAGUCGca--AUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 128612 0.66 0.999576
Target:  5'- uCCAUCAUCcuagccgagaaauccGUCAauauGCGUU-ACUGCGUg -3'
miRNA:   3'- -GGUGGUAG---------------UAGU----CGCAAuUGACGCGg -5'
30220 3' -50 NC_006273.1 + 193809 0.66 0.999696
Target:  5'- aCCACCG-CGUacaAGUucgagcaaccgacGUUGACguucgGCGCCg -3'
miRNA:   3'- -GGUGGUaGUAg--UCG-------------CAAUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 152360 0.67 0.998956
Target:  5'- -gACCAUCAaccaaacCAGCGUcaagguGCUGCGUg -3'
miRNA:   3'- ggUGGUAGUa------GUCGCAau----UGACGCGg -5'
30220 3' -50 NC_006273.1 + 206137 0.67 0.998956
Target:  5'- gCC-CCAaaggaCGUCAGCaccGUUGACUGUgacGCCa -3'
miRNA:   3'- -GGuGGUa----GUAGUCG---CAAUUGACG---CGG- -5'
30220 3' -50 NC_006273.1 + 163695 0.67 0.998738
Target:  5'- aCCGCCugccaCGUCGGCGgccacAUUGUGCa -3'
miRNA:   3'- -GGUGGua---GUAGUCGCaau--UGACGCGg -5'
30220 3' -50 NC_006273.1 + 27193 0.67 0.998482
Target:  5'- uCCugCAgcugCAccaCGGCcuuaugUGGCUGCGCCg -3'
miRNA:   3'- -GGugGUa---GUa--GUCGca----AUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 13047 0.67 0.998956
Target:  5'- aCUcCCGUgUAUCGGCGUacAgUGCGCUg -3'
miRNA:   3'- -GGuGGUA-GUAGUCGCAauUgACGCGG- -5'
30220 3' -50 NC_006273.1 + 42271 0.67 0.998956
Target:  5'- aCCGCCGUCGUUAccGCcGgaGACccGCGCUc -3'
miRNA:   3'- -GGUGGUAGUAGU--CG-CaaUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 95236 0.67 0.998956
Target:  5'- cCCACCAggcugUGGCGUguguGCUG-GCCg -3'
miRNA:   3'- -GGUGGUagua-GUCGCAau--UGACgCGG- -5'
30220 3' -50 NC_006273.1 + 158843 0.67 0.998738
Target:  5'- gCGCCA-CGUCcuCGUgcGCcGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGucGCAauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 194851 0.67 0.998482
Target:  5'- aCCGCCcucgGUCcccGUgAGCGgUAGC-GCGCCg -3'
miRNA:   3'- -GGUGG----UAG---UAgUCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 19964 0.67 0.999141
Target:  5'- aCCGCCGUCAUCAcagcaucacGCcGUaucacccgAACUGcCGUCg -3'
miRNA:   3'- -GGUGGUAGUAGU---------CG-CAa-------UUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 232977 0.67 0.998151
Target:  5'- gCCGCCGcgcggccUCggCGGCGggcgccGACUcGCGCCc -3'
miRNA:   3'- -GGUGGU-------AGuaGUCGCaa----UUGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 189321 0.67 0.998482
Target:  5'- aCCugCggCGUCGGCGggUGGgUG-GCCa -3'
miRNA:   3'- -GGugGuaGUAGUCGCa-AUUgACgCGG- -5'
30220 3' -50 NC_006273.1 + 208214 0.67 0.998482
Target:  5'- -aGCCAUg--CAGCGU--GCgGCGCCu -3'
miRNA:   3'- ggUGGUAguaGUCGCAauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 179133 0.67 0.998956
Target:  5'- gCCACCGUCccUCAGCGacgucCcGCGCg -3'
miRNA:   3'- -GGUGGUAGu-AGUCGCaauu-GaCGCGg -5'
30220 3' -50 NC_006273.1 + 114439 0.67 0.998184
Target:  5'- aCGCCccgCGUCAcCGgcGGCgGCGCCa -3'
miRNA:   3'- gGUGGua-GUAGUcGCaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 187277 0.67 0.998738
Target:  5'- gUACCAUgGcuaCGGUGgugAACUGCGUCg -3'
miRNA:   3'- gGUGGUAgUa--GUCGCaa-UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 87078 0.67 0.998482
Target:  5'- gCCGCCG-CGUuucucuugaaCGGCGUgGACUcCGCCa -3'
miRNA:   3'- -GGUGGUaGUA----------GUCGCAaUUGAcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.