miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 229652 0.67 0.998482
Target:  5'- aCgACgaGUCGUCGGCGUcuuccucgGGCgaaGCGCCa -3'
miRNA:   3'- -GgUGg-UAGUAGUCGCAa-------UUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 45711 0.67 0.998738
Target:  5'- uCCAuCCGucUCAUCGGacac--CUGCGCCa -3'
miRNA:   3'- -GGU-GGU--AGUAGUCgcaauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 71385 0.67 0.998738
Target:  5'- uCC-CCAUgggcUGUCAGCGUcGGgUGCGCg -3'
miRNA:   3'- -GGuGGUA----GUAGUCGCAaUUgACGCGg -5'
30220 3' -50 NC_006273.1 + 64216 0.67 0.999141
Target:  5'- gCACCGaCAUC-GCGc--GCUaGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGuCGCaauUGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 19964 0.67 0.999141
Target:  5'- aCCGCCGUCAUCAcagcaucacGCcGUaucacccgAACUGcCGUCg -3'
miRNA:   3'- -GGUGGUAGUAGU---------CG-CAa-------UUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 13047 0.67 0.998956
Target:  5'- aCUcCCGUgUAUCGGCGUacAgUGCGCUg -3'
miRNA:   3'- -GGuGGUA-GUAGUCGCAauUgACGCGG- -5'
30220 3' -50 NC_006273.1 + 95946 0.67 0.999141
Target:  5'- uUCACCAaug-UGGCGgc-GCUGUGCCg -3'
miRNA:   3'- -GGUGGUaguaGUCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 194851 0.67 0.998482
Target:  5'- aCCGCCcucgGUCcccGUgAGCGgUAGC-GCGCCg -3'
miRNA:   3'- -GGUGG----UAG---UAgUCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 186129 0.67 0.999141
Target:  5'- aCCACCAguUguUgGGCGc--GCUGgGCCa -3'
miRNA:   3'- -GGUGGU--AguAgUCGCaauUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 202570 0.67 0.999141
Target:  5'- gCgGCCGaCggCAGCGU--GCUGUGCUc -3'
miRNA:   3'- -GgUGGUaGuaGUCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 202146 0.67 0.999141
Target:  5'- cCCGCCGUCGUCGcCGccccggGGCccucggUGCGCUa -3'
miRNA:   3'- -GGUGGUAGUAGUcGCaa----UUG------ACGCGG- -5'
30220 3' -50 NC_006273.1 + 137195 0.67 0.999141
Target:  5'- gCCGCUcagcgagcucGUCGcCAGCGcgAGCgcucgGCGCCc -3'
miRNA:   3'- -GGUGG----------UAGUaGUCGCaaUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 130741 0.67 0.999141
Target:  5'- aCCGCgGUUA-CGGUGUUucUUGCGCUc -3'
miRNA:   3'- -GGUGgUAGUaGUCGCAAuuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 41535 0.67 0.998956
Target:  5'- gCGCCAg---CAGgaaCGUUAACUccgGCGCCg -3'
miRNA:   3'- gGUGGUaguaGUC---GCAAUUGA---CGCGG- -5'
30220 3' -50 NC_006273.1 + 102872 0.67 0.999141
Target:  5'- aCCACguCGUCuUCGGCGUcgGGCgGCGgCg -3'
miRNA:   3'- -GGUG--GUAGuAGUCGCAa-UUGaCGCgG- -5'
30220 3' -50 NC_006273.1 + 187277 0.67 0.998738
Target:  5'- gUACCAUgGcuaCGGUGgugAACUGCGUCg -3'
miRNA:   3'- gGUGGUAgUa--GUCGCaa-UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 177242 0.67 0.999141
Target:  5'- cCCACCGUgGU--GCGgaggccGCUGCGCg -3'
miRNA:   3'- -GGUGGUAgUAguCGCaau---UGACGCGg -5'
30220 3' -50 NC_006273.1 + 38084 0.67 0.998151
Target:  5'- gCCGCCGcgcggccUCggCGGCGggcgccGACUcGCGCCc -3'
miRNA:   3'- -GGUGGU-------AGuaGUCGCaa----UUGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 213485 0.67 0.998738
Target:  5'- gUCACCGUCAaCAGCGUcguc-GCGUg -3'
miRNA:   3'- -GGUGGUAGUaGUCGCAauugaCGCGg -5'
30220 3' -50 NC_006273.1 + 117282 0.67 0.998738
Target:  5'- aCCGCCAUCuccuguaCAGCcgc--CUGCGCUu -3'
miRNA:   3'- -GGUGGUAGua-----GUCGcaauuGACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.