miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 163695 0.67 0.998738
Target:  5'- aCCGCCugccaCGUCGGCGgccacAUUGUGCa -3'
miRNA:   3'- -GGUGGua---GUAGUCGCaau--UGACGCGg -5'
30220 3' -50 NC_006273.1 + 206137 0.67 0.998956
Target:  5'- gCC-CCAaaggaCGUCAGCaccGUUGACUGUgacGCCa -3'
miRNA:   3'- -GGuGGUa----GUAGUCG---CAAUUGACG---CGG- -5'
30220 3' -50 NC_006273.1 + 202570 0.67 0.999141
Target:  5'- gCgGCCGaCggCAGCGU--GCUGUGCUc -3'
miRNA:   3'- -GgUGGUaGuaGUCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 42271 0.67 0.998956
Target:  5'- aCCGCCGUCGUUAccGCcGgaGACccGCGCUc -3'
miRNA:   3'- -GGUGGUAGUAGU--CG-CaaUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 95946 0.67 0.999141
Target:  5'- uUCACCAaug-UGGCGgc-GCUGUGCCg -3'
miRNA:   3'- -GGUGGUaguaGUCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 179133 0.67 0.998956
Target:  5'- gCCACCGUCccUCAGCGacgucCcGCGCg -3'
miRNA:   3'- -GGUGGUAGu-AGUCGCaauu-GaCGCGg -5'
30220 3' -50 NC_006273.1 + 180054 0.67 0.999033
Target:  5'- gCGCCGUCuUCGGCGUgcaucccgauacgcGGCagGCGCa -3'
miRNA:   3'- gGUGGUAGuAGUCGCAa-------------UUGa-CGCGg -5'
30220 3' -50 NC_006273.1 + 73045 0.67 0.999124
Target:  5'- aCCACCAcCggCAGaCGagGACgauuuuuUGCGCCg -3'
miRNA:   3'- -GGUGGUaGuaGUC-GCaaUUG-------ACGCGG- -5'
30220 3' -50 NC_006273.1 + 179407 0.68 0.997874
Target:  5'- aCUugCAgaagcugguucgucgCGUCAGCGgcacgguGCUGCGUCu -3'
miRNA:   3'- -GGugGUa--------------GUAGUCGCaau----UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 46984 0.68 0.996453
Target:  5'- aCCACgGUCga-GGCGgugGAUcugUGCGCCg -3'
miRNA:   3'- -GGUGgUAGuagUCGCaa-UUG---ACGCGG- -5'
30220 3' -50 NC_006273.1 + 129567 0.68 0.99634
Target:  5'- aCGCUcuaauaGUCGUCGGCGgcuccgcuauGCcGCGCCg -3'
miRNA:   3'- gGUGG------UAGUAGUCGCaau-------UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 78491 0.68 0.996223
Target:  5'- aUCACCGUUGUCGGaggaacccuGCgGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGUCgcaau----UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 15072 0.68 0.997395
Target:  5'- -aGCCGUCGUUGGUGgugGGCUGUccgugcuaaucugGCCa -3'
miRNA:   3'- ggUGGUAGUAGUCGCaa-UUGACG-------------CGG- -5'
30220 3' -50 NC_006273.1 + 19784 0.68 0.997438
Target:  5'- cUCAUCcUUAUgAGCGU---CUGCGCCu -3'
miRNA:   3'- -GGUGGuAGUAgUCGCAauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 164271 0.68 0.996104
Target:  5'- gCCGCCGUCgGUCgaucagguacucgcaGGUGUgcGCgucgGCGCCc -3'
miRNA:   3'- -GGUGGUAG-UAG---------------UCGCAauUGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 31647 0.68 0.995855
Target:  5'- gCACCAU--UC-GCGU--GCUGCGCUg -3'
miRNA:   3'- gGUGGUAguAGuCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 144302 0.68 0.997838
Target:  5'- cCUACCgAUCuggCGGCGUUG--UGCGCg -3'
miRNA:   3'- -GGUGG-UAGua-GUCGCAAUugACGCGg -5'
30220 3' -50 NC_006273.1 + 186315 0.68 0.997838
Target:  5'- aCCACCGUU-UCAGCGgccGGCgUGagGCCa -3'
miRNA:   3'- -GGUGGUAGuAGUCGCaa-UUG-ACg-CGG- -5'
30220 3' -50 NC_006273.1 + 55510 0.68 0.995855
Target:  5'- aCgACCGUCGUCAGCGccucgUUAccguCU-CGCCa -3'
miRNA:   3'- -GgUGGUAGUAGUCGC-----AAUu---GAcGCGG- -5'
30220 3' -50 NC_006273.1 + 38342 0.68 0.995855
Target:  5'- gCCACCGUCGUC-GCc---GCUGcCGCUc -3'
miRNA:   3'- -GGUGGUAGUAGuCGcaauUGAC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.