miRNA display CGI


Results 101 - 120 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 19784 0.68 0.997438
Target:  5'- cUCAUCcUUAUgAGCGU---CUGCGCCu -3'
miRNA:   3'- -GGUGGuAGUAgUCGCAauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 212412 0.68 0.997838
Target:  5'- uCCGCCGuguuUC-UCGGCGUacuGCUGCaCCc -3'
miRNA:   3'- -GGUGGU----AGuAGUCGCAau-UGACGcGG- -5'
30220 3' -50 NC_006273.1 + 39443 0.68 0.997838
Target:  5'- uUCACCGUCAacguggauUCAcuauGCGUggacgcggAACaGCGCCa -3'
miRNA:   3'- -GGUGGUAGU--------AGU----CGCAa-------UUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 112559 0.68 0.997838
Target:  5'- gUCGCCG-CGUCAGCGgccGCcgGUGCUu -3'
miRNA:   3'- -GGUGGUaGUAGUCGCaauUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 125981 0.68 0.997438
Target:  5'- gCACCGUgG-CGGCGgc-AUUGCGCUc -3'
miRNA:   3'- gGUGGUAgUaGUCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 59316 0.68 0.997438
Target:  5'- aCGCUGUucaCAUCGGCGUUAAgUcGCGUUa -3'
miRNA:   3'- gGUGGUA---GUAGUCGCAAUUgA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 204318 0.68 0.996979
Target:  5'- gCC-CCGUCAUuuucCAGCug-GGgUGCGCCg -3'
miRNA:   3'- -GGuGGUAGUA----GUCGcaaUUgACGCGG- -5'
30220 3' -50 NC_006273.1 + 68832 0.68 0.996979
Target:  5'- gCCGCgCGUCAUCaaaaAGUGcaggAACUGUGCa -3'
miRNA:   3'- -GGUG-GUAGUAG----UCGCaa--UUGACGCGg -5'
30220 3' -50 NC_006273.1 + 191770 0.68 0.996672
Target:  5'- aCCAUCAUCGaCGGcCGUUAuaaagccacccggacAC-GCGCCg -3'
miRNA:   3'- -GGUGGUAGUaGUC-GCAAU---------------UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 126891 0.68 0.997982
Target:  5'- uCCACCAgcUCgGUCAGCaucucgccuacggcUUGACguUGCGCCg -3'
miRNA:   3'- -GGUGGU--AG-UAGUCGc-------------AAUUG--ACGCGG- -5'
30220 3' -50 NC_006273.1 + 38169 0.68 0.996453
Target:  5'- aCACCGUCucggaCGGCGggacgccgAGCccGCGCCg -3'
miRNA:   3'- gGUGGUAGua---GUCGCaa------UUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 46984 0.68 0.996453
Target:  5'- aCCACgGUCga-GGCGgugGAUcugUGCGCCg -3'
miRNA:   3'- -GGUGgUAGuagUCGCaa-UUG---ACGCGG- -5'
30220 3' -50 NC_006273.1 + 124114 0.68 0.9978
Target:  5'- gCGgCGUCGacagagcUCGGCGUUGGCgGCGgCa -3'
miRNA:   3'- gGUgGUAGU-------AGUCGCAAUUGaCGCgG- -5'
30220 3' -50 NC_006273.1 + 144302 0.68 0.997838
Target:  5'- cCUACCgAUCuggCGGCGUUG--UGCGCg -3'
miRNA:   3'- -GGUGG-UAGua-GUCGCAAUugACGCGg -5'
30220 3' -50 NC_006273.1 + 179407 0.68 0.997874
Target:  5'- aCUugCAgaagcugguucgucgCGUCAGCGgcacgguGCUGCGUCu -3'
miRNA:   3'- -GGugGUa--------------GUAGUCGCaau----UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 38342 0.68 0.995855
Target:  5'- gCCACCGUCGUC-GCc---GCUGcCGCUc -3'
miRNA:   3'- -GGUGGUAGUAGuCGcaauUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 55510 0.68 0.995855
Target:  5'- aCgACCGUCGUCAGCGccucgUUAccguCU-CGCCa -3'
miRNA:   3'- -GgUGGUAGUAGUCGC-----AAUu---GAcGCGG- -5'
30220 3' -50 NC_006273.1 + 31647 0.68 0.995855
Target:  5'- gCACCAU--UC-GCGU--GCUGCGCUg -3'
miRNA:   3'- gGUGGUAguAGuCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 164271 0.68 0.996104
Target:  5'- gCCGCCGUCgGUCgaucagguacucgcaGGUGUgcGCgucgGCGCCc -3'
miRNA:   3'- -GGUGGUAG-UAG---------------UCGCAauUGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 129567 0.68 0.99634
Target:  5'- aCGCUcuaauaGUCGUCGGCGgcuccgcuauGCcGCGCCg -3'
miRNA:   3'- gGUGG------UAGUAGUCGCaau-------UGaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.