miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 63477 0.76 0.832771
Target:  5'- cCCACUcUUG-CAGCGUUAGCaGCGCCc -3'
miRNA:   3'- -GGUGGuAGUaGUCGCAAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 86524 0.75 0.872209
Target:  5'- gUCGCCGUCGUCAcGCGgcAGCgGCGgCa -3'
miRNA:   3'- -GGUGGUAGUAGU-CGCaaUUGaCGCgG- -5'
30220 3' -50 NC_006273.1 + 96995 0.75 0.879466
Target:  5'- -gGCCGUCuccCAGUGUgacCUGCGCCg -3'
miRNA:   3'- ggUGGUAGua-GUCGCAauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 94712 0.74 0.923796
Target:  5'- cCCGCCGUCGUCgccugcGGCGUUGGC-GCagggaauucguaGCCg -3'
miRNA:   3'- -GGUGGUAGUAG------UCGCAAUUGaCG------------CGG- -5'
30220 3' -50 NC_006273.1 + 136447 0.74 0.912318
Target:  5'- aUCACCGUCggCGGgGcgGACUGCGUa -3'
miRNA:   3'- -GGUGGUAGuaGUCgCaaUUGACGCGg -5'
30220 3' -50 NC_006273.1 + 140993 0.74 0.912318
Target:  5'- gCC-CCAUCGUCAuCcaaGACUGCGCCg -3'
miRNA:   3'- -GGuGGUAGUAGUcGcaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 149665 0.74 0.918178
Target:  5'- aCGCCGcCcgCGGCGUUAgguggcuguuGCUGCGCg -3'
miRNA:   3'- gGUGGUaGuaGUCGCAAU----------UGACGCGg -5'
30220 3' -50 NC_006273.1 + 78419 0.74 0.918178
Target:  5'- cCCGCCGcCGUCAGCGUcguCguccGUGCCa -3'
miRNA:   3'- -GGUGGUaGUAGUCGCAauuGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 124984 0.74 0.923796
Target:  5'- gCAUCAaCGUCAGCGUcauAUUGCGCa -3'
miRNA:   3'- gGUGGUaGUAGUCGCAau-UGACGCGg -5'
30220 3' -50 NC_006273.1 + 99471 0.74 0.906218
Target:  5'- -uGCuCAUCGUCAGCG--AACcGCGCCu -3'
miRNA:   3'- ggUG-GUAGUAGUCGCaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 65786 0.74 0.929172
Target:  5'- -uGCCGUCaAUCAGCGcucgUGuCUGCGUCg -3'
miRNA:   3'- ggUGGUAG-UAGUCGCa---AUuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 226536 0.73 0.943847
Target:  5'- aCCACCAgcagacUAUCAGCGUggccacgAACgagcccGCGCCc -3'
miRNA:   3'- -GGUGGUa-----GUAGUCGCAa------UUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 117698 0.73 0.94826
Target:  5'- cCCAUUAUCccgggugggGUCGGCGUUAcgaGCccGCGCCg -3'
miRNA:   3'- -GGUGGUAG---------UAGUCGCAAU---UGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 1715 0.73 0.934305
Target:  5'- uCCGCCG-CggCGGUGgcGACUGgGCCg -3'
miRNA:   3'- -GGUGGUaGuaGUCGCaaUUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 153847 0.73 0.952436
Target:  5'- aUCAUCGUCAUCGacgaguGCGgccuuauGCUGCGCUa -3'
miRNA:   3'- -GGUGGUAGUAGU------CGCaau----UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 42168 0.73 0.939197
Target:  5'- gCCGCCGcCGcCAGCGgUAGCUGCuCCg -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaAUUGACGcGG- -5'
30220 3' -50 NC_006273.1 + 179609 0.73 0.934305
Target:  5'- cCCACCGcuacccguacUCAUCGGCGagGGCgucGCGUCu -3'
miRNA:   3'- -GGUGGU----------AGUAGUCGCaaUUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 166931 0.73 0.952436
Target:  5'- gCGgCAUCGUCuGCGUgaugAGCUGCugGCCc -3'
miRNA:   3'- gGUgGUAGUAGuCGCAa---UUGACG--CGG- -5'
30220 3' -50 NC_006273.1 + 197737 0.73 0.943847
Target:  5'- gCGCCGUCAaCAGCGUgccuuuuGCcGCGCg -3'
miRNA:   3'- gGUGGUAGUaGUCGCAau-----UGaCGCGg -5'
30220 3' -50 NC_006273.1 + 95505 0.73 0.943847
Target:  5'- -gACCGagaaAUCGGCGgccggaGACUGCGCCg -3'
miRNA:   3'- ggUGGUag--UAGUCGCaa----UUGACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.