Results 81 - 100 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30220 | 3' | -50 | NC_006273.1 | + | 108771 | 0.69 | 0.991508 |
Target: 5'- cCCACCAUCugcCGGCGUUGA--GCGaCg -3' miRNA: 3'- -GGUGGUAGua-GUCGCAAUUgaCGCgG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 40471 | 0.69 | 0.995458 |
Target: 5'- aCCGCgGgauaCGUCGGCGUggucgaggcggcccGGCUGCuGCCg -3' miRNA: 3'- -GGUGgUa---GUAGUCGCAa-------------UUGACG-CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 68865 | 0.69 | 0.993549 |
Target: 5'- aCCACCGUUAcCAGUaccaccGCUGcCGCCg -3' miRNA: 3'- -GGUGGUAGUaGUCGcaau--UGAC-GCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 37860 | 0.69 | 0.994411 |
Target: 5'- aCCGCCGUgacaCAUCAG-GUccaucuugAGCUGgCGCCg -3' miRNA: 3'- -GGUGGUA----GUAGUCgCAa-------UUGAC-GCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 38749 | 0.69 | 0.993457 |
Target: 5'- gCCACCGUCGUgccggcccaccgcCGGCGc-AGCUcccguccgaGCGCCg -3' miRNA: 3'- -GGUGGUAGUA-------------GUCGCaaUUGA---------CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 196036 | 0.69 | 0.992584 |
Target: 5'- gCCGCCucGUCGUCGuccaucgugccGCGg-AACUGCGCg -3' miRNA: 3'- -GGUGG--UAGUAGU-----------CGCaaUUGACGCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 25168 | 0.69 | 0.992584 |
Target: 5'- aCUACCGUCGUCcgacGCGaUGACguuaaCGCCg -3' miRNA: 3'- -GGUGGUAGUAGu---CGCaAUUGac---GCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 166627 | 0.69 | 0.992584 |
Target: 5'- aCCGCCuggaccauGUCGacccgCGGCGUgGAC-GCGCCg -3' miRNA: 3'- -GGUGG--------UAGUa----GUCGCAaUUGaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 134932 | 0.69 | 0.994411 |
Target: 5'- uCCGCCGaCAcCGGCGccgcgUGACgcGCGCCc -3' miRNA: 3'- -GGUGGUaGUaGUCGCa----AUUGa-CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 111911 | 0.69 | 0.991162 |
Target: 5'- gCCGCgCAUCAcaCGGCGUUAcacgacugucuggcGCUGCaucuGCCa -3' miRNA: 3'- -GGUG-GUAGUa-GUCGCAAU--------------UGACG----CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 75926 | 0.69 | 0.993549 |
Target: 5'- gCCAUgGUCAUgGGCGaaGACacgGUGCCu -3' miRNA: 3'- -GGUGgUAGUAgUCGCaaUUGa--CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 233641 | 0.69 | 0.993457 |
Target: 5'- gCCACCGUCGUgccggcccaccgcCGGCGc-AGCUcccguccgaGCGCCg -3' miRNA: 3'- -GGUGGUAGUA-------------GUCGCaaUUGA---------CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 189888 | 0.69 | 0.992584 |
Target: 5'- aCCGCCGggCAUCGcCGUcGGCUGCGaCg -3' miRNA: 3'- -GGUGGUa-GUAGUcGCAaUUGACGCgG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 70694 | 0.69 | 0.991508 |
Target: 5'- aCACCGUUGUacGCGU--GCUGCGaCCg -3' miRNA: 3'- gGUGGUAGUAguCGCAauUGACGC-GG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 128402 | 0.69 | 0.995177 |
Target: 5'- uCCAUgcUCAgCGGCGUUaAGCUGUGCg -3' miRNA: 3'- -GGUGguAGUaGUCGCAA-UUGACGCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 152966 | 0.69 | 0.991508 |
Target: 5'- uUCACCAUCAUCcuCGUggccaUAGCUGUaGUCa -3' miRNA: 3'- -GGUGGUAGUAGucGCA-----AUUGACG-CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 41489 | 0.69 | 0.991953 |
Target: 5'- -gGCCGUggaaggauugacaggCGUCGGCGUgaggaUGGCaGCGCCg -3' miRNA: 3'- ggUGGUA---------------GUAGUCGCA-----AUUGaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 1802 | 0.69 | 0.993549 |
Target: 5'- gCCGCCAaccugUCGUCAccuuacUGUUGGC-GCGCCa -3' miRNA: 3'- -GGUGGU-----AGUAGUc-----GCAAUUGaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 44219 | 0.69 | 0.994329 |
Target: 5'- -aACCuUCGUCAGCGUguuACUcaucuccuucgugGCGCUa -3' miRNA: 3'- ggUGGuAGUAGUCGCAau-UGA-------------CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 73733 | 0.69 | 0.99364 |
Target: 5'- gCCGCCAUgGguggCGGCGgcGGCcgaggcccggcagcgGCGCCg -3' miRNA: 3'- -GGUGGUAgUa---GUCGCaaUUGa--------------CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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