miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 205805 1.06 0.028657
Target:  5'- gCCACCAUCAUCAGCGUauACUGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGUCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 170855 0.82 0.567959
Target:  5'- aCACCGUCGuuacaagcaUCGGcCGUgcGCUGCGCCa -3'
miRNA:   3'- gGUGGUAGU---------AGUC-GCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 38302 0.81 0.588362
Target:  5'- cCCACCAUCAccgUCGGCGccgccGCUGCuGCCg -3'
miRNA:   3'- -GGUGGUAGU---AGUCGCaau--UGACG-CGG- -5'
30220 3' -50 NC_006273.1 + 233195 0.81 0.588362
Target:  5'- cCCACCAUCAccgUCGGCGccgccGCUGCuGCCg -3'
miRNA:   3'- -GGUGGUAGU---AGUCGCaau--UGACG-CGG- -5'
30220 3' -50 NC_006273.1 + 73123 0.8 0.650106
Target:  5'- aCCGCCGaCGUCuGCGccgcaAACUGCGCCg -3'
miRNA:   3'- -GGUGGUaGUAGuCGCaa---UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 56367 0.8 0.659365
Target:  5'- aCCGCCGUCGUCuccgccGGCGUUuucuccaucgcggGACcGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAG------UCGCAA-------------UUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 31457 0.8 0.660393
Target:  5'- gCCGCCAUgA--GGCGgUGGCUGCGCCu -3'
miRNA:   3'- -GGUGGUAgUagUCGCaAUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 75619 0.79 0.69413
Target:  5'- gCGCCAUCAUCAGCaucugccucaaacagGACUGCGaCCa -3'
miRNA:   3'- gGUGGUAGUAGUCGcaa------------UUGACGC-GG- -5'
30220 3' -50 NC_006273.1 + 77718 0.79 0.721321
Target:  5'- aCCACguCGUUAUCAGCGU--GCUGUGUCa -3'
miRNA:   3'- -GGUG--GUAGUAGUCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 194953 0.78 0.740128
Target:  5'- cCCACCGUCGUCuacggccaaaagcAGCGUaucgaaUGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAG-------------UCGCAauug--ACGCGG- -5'
30220 3' -50 NC_006273.1 + 21461 0.78 0.760509
Target:  5'- gCCACCGUCGcccUCAGCGUgcucAGCUGguggcucaugcCGCCa -3'
miRNA:   3'- -GGUGGUAGU---AGUCGCAa---UUGAC-----------GCGG- -5'
30220 3' -50 NC_006273.1 + 119717 0.78 0.760509
Target:  5'- uCUACCAgCGUCAGCGggAug-GCGCCg -3'
miRNA:   3'- -GGUGGUaGUAGUCGCaaUugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 198581 0.78 0.779449
Target:  5'- aCCACaCGUCGUgagCAGCGUgaccuGCUGcCGCCa -3'
miRNA:   3'- -GGUG-GUAGUA---GUCGCAau---UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 230015 0.77 0.797854
Target:  5'- uCC-CCAUCAUCAGCGUcacAACUGaCGUg -3'
miRNA:   3'- -GGuGGUAGUAGUCGCAa--UUGAC-GCGg -5'
30220 3' -50 NC_006273.1 + 161813 0.77 0.805941
Target:  5'- uCCugCAUCAg-AGCGUUAAUcagacuuucgacgUGCGCCa -3'
miRNA:   3'- -GGugGUAGUagUCGCAAUUG-------------ACGCGG- -5'
30220 3' -50 NC_006273.1 + 47678 0.77 0.81565
Target:  5'- aC-CCAUCAUCGGCGUgauGCUcGUGCUg -3'
miRNA:   3'- gGuGGUAGUAGUCGCAau-UGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 165281 0.77 0.81565
Target:  5'- aUCACCGUCAUcCAGCGcggcGCUGUGUCc -3'
miRNA:   3'- -GGUGGUAGUA-GUCGCaau-UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 161615 0.77 0.824299
Target:  5'- cCCACCAUgGUCGcCGcUGGCgGCGCCg -3'
miRNA:   3'- -GGUGGUAgUAGUcGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 63477 0.76 0.832771
Target:  5'- cCCACUcUUG-CAGCGUUAGCaGCGCCc -3'
miRNA:   3'- -GGUGGuAGUaGUCGCAAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 144378 0.76 0.836108
Target:  5'- gCCACCAaguucuacgaggccuUCGUCAGCGgcugucuGCccgGCGCCg -3'
miRNA:   3'- -GGUGGU---------------AGUAGUCGCaau----UGa--CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.