miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 49667 0.72 0.95638
Target:  5'- -aGCCGUCGaCAGCGUggacGACUGgGCg -3'
miRNA:   3'- ggUGGUAGUaGUCGCAa---UUGACgCGg -5'
30220 3' -50 NC_006273.1 + 171160 0.72 0.960094
Target:  5'- -gGCCAggUCAUCGGCGcUAGC-GCGCg -3'
miRNA:   3'- ggUGGU--AGUAGUCGCaAUUGaCGCGg -5'
30220 3' -50 NC_006273.1 + 131042 0.72 0.961517
Target:  5'- gCCGCCAUUugacuuuacggggCAGC---AGCUGCGCCg -3'
miRNA:   3'- -GGUGGUAGua-----------GUCGcaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 136697 0.72 0.966857
Target:  5'- aCGCgGUCAUgAGUugGUgcaGCUGCGCCu -3'
miRNA:   3'- gGUGgUAGUAgUCG--CAau-UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 122517 0.72 0.966857
Target:  5'- aCACCGUCAcguuuUCcaaAGCGUUGACcaCGCCg -3'
miRNA:   3'- gGUGGUAGU-----AG---UCGCAAUUGacGCGG- -5'
30220 3' -50 NC_006273.1 + 147781 0.72 0.966857
Target:  5'- aCCGCCG-CAaCAGCGgcGACggacgGCGUCg -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaaUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 21929 0.72 0.969915
Target:  5'- gCCGCCggCAUCGG-GUaGACgGCGCUa -3'
miRNA:   3'- -GGUGGuaGUAGUCgCAaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 215141 0.72 0.969915
Target:  5'- -gACCGUCAg-AGCGUUAua-GCGCCg -3'
miRNA:   3'- ggUGGUAGUagUCGCAAUugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 129059 0.72 0.969915
Target:  5'- gCACCAUCGaaggcgauaUCGGCGUUuuccccuguuUUGUGCCa -3'
miRNA:   3'- gGUGGUAGU---------AGUCGCAAuu--------GACGCGG- -5'
30220 3' -50 NC_006273.1 + 143859 0.71 0.972766
Target:  5'- gCCGCCAUCAUCAuGUGgg----GCGUCu -3'
miRNA:   3'- -GGUGGUAGUAGU-CGCaauugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 64520 0.71 0.972766
Target:  5'- cCCGCCGgcucgaCAUCGGUGUcc-CUGcCGCCg -3'
miRNA:   3'- -GGUGGUa-----GUAGUCGCAauuGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 162893 0.71 0.972766
Target:  5'- aCCACCAUCAUCAccaccauaacGcCGUgacgGACgugGcCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGU----------C-GCAa---UUGa--C-GCGG- -5'
30220 3' -50 NC_006273.1 + 131256 0.71 0.972766
Target:  5'- aUCGCCgcGUCGggucUCGGCGUgcGC-GCGCCg -3'
miRNA:   3'- -GGUGG--UAGU----AGUCGCAauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 64977 0.71 0.972766
Target:  5'- gUCACCGUCAaCu-CGUUGGCgcGCGCCg -3'
miRNA:   3'- -GGUGGUAGUaGucGCAAUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 38632 0.71 0.975417
Target:  5'- aCgGCCGUCAgCAGCGacgcgggguGCgGCGCCg -3'
miRNA:   3'- -GgUGGUAGUaGUCGCaau------UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 98496 0.71 0.975417
Target:  5'- gUCAUCGUagcUCAGCucgcGACUGCGCCa -3'
miRNA:   3'- -GGUGGUAgu-AGUCGcaa-UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 103732 0.71 0.977874
Target:  5'- gCGCCG-CGUCAGCGUcguaAGCcaccacGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGUCGCAa---UUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 200387 0.71 0.977874
Target:  5'- aCCGCCGUCGcUCcGCGUc-GCUuCGCCg -3'
miRNA:   3'- -GGUGGUAGU-AGuCGCAauUGAcGCGG- -5'
30220 3' -50 NC_006273.1 + 52817 0.71 0.977874
Target:  5'- cUCACCGUCAauuacgccaugUUGGCGgcgUAACcgGUGCCg -3'
miRNA:   3'- -GGUGGUAGU-----------AGUCGCa--AUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 26330 0.71 0.979706
Target:  5'- aCCGCgAUCGUCAuGCGUgucuacggauuGCUGaCGCUg -3'
miRNA:   3'- -GGUGgUAGUAGU-CGCAau---------UGAC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.