miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 152439 0.71 0.980145
Target:  5'- gCCGCCA-CGUacaAGCGgaugUGcuugccgcgcaGCUGCGCCu -3'
miRNA:   3'- -GGUGGUaGUAg--UCGCa---AU-----------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 77152 0.71 0.980145
Target:  5'- aCCGCCGUCGcCGGCc--GACgcGCGCCc -3'
miRNA:   3'- -GGUGGUAGUaGUCGcaaUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 122045 0.71 0.980145
Target:  5'- aCACCAggAUCAGCGagGGCUG-GCUc -3'
miRNA:   3'- gGUGGUagUAGUCGCaaUUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 161947 0.71 0.980145
Target:  5'- gCACCGUCAUCguGGUGgcgAGC-GCGCUc -3'
miRNA:   3'- gGUGGUAGUAG--UCGCaa-UUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 163060 0.71 0.980145
Target:  5'- cCCACCAagaUCGuccucuuugcacUCAGCGccgcGCUGCGCg -3'
miRNA:   3'- -GGUGGU---AGU------------AGUCGCaau-UGACGCGg -5'
30220 3' -50 NC_006273.1 + 48037 0.71 0.980145
Target:  5'- uCCGCCGgaCAU-GGCGgUGACgGCGCCg -3'
miRNA:   3'- -GGUGGUa-GUAgUCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 227106 0.71 0.982238
Target:  5'- aCCGCCcacggCGGCGUggguaUGCGCCg -3'
miRNA:   3'- -GGUGGuaguaGUCGCAauug-ACGCGG- -5'
30220 3' -50 NC_006273.1 + 188027 0.7 0.98416
Target:  5'- -uGCUAUCGUCgccgguuucgGGCGaUGACaGCGCCg -3'
miRNA:   3'- ggUGGUAGUAG----------UCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 46796 0.7 0.98416
Target:  5'- aCCGgCGUuaagcccgaggaCAUCAGCGUgcACcuggGCGCCg -3'
miRNA:   3'- -GGUgGUA------------GUAGUCGCAauUGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 133415 0.7 0.984883
Target:  5'- gCCGCgCGUCgaggagaacgaccuuGUCAaCGUgguGCUGCGCCg -3'
miRNA:   3'- -GGUG-GUAG---------------UAGUcGCAau-UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 196600 0.7 0.98592
Target:  5'- gCGCCGagAggcgacggcgcUCGGaCGggAGCUGCGCCg -3'
miRNA:   3'- gGUGGUagU-----------AGUC-GCaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 130257 0.7 0.986581
Target:  5'- aCCGCCGguggCGUCGGUGgugcaaccgucgcAGCcGCGCCg -3'
miRNA:   3'- -GGUGGUa---GUAGUCGCaa-----------UUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 118442 0.7 0.987061
Target:  5'- cCCGCCcaaagacaugguagAUCugaAUCGGCGgauuuuugUGGCUGCGCUc -3'
miRNA:   3'- -GGUGG--------------UAG---UAGUCGCa-------AUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 127506 0.7 0.987527
Target:  5'- aUCAaCGUCAcCAGCGcgUAGCUGUGCg -3'
miRNA:   3'- -GGUgGUAGUaGUCGCa-AUUGACGCGg -5'
30220 3' -50 NC_006273.1 + 126852 0.7 0.987527
Target:  5'- gCCugCAg---CAGCGgcgUAugUGCGUCg -3'
miRNA:   3'- -GGugGUaguaGUCGCa--AUugACGCGG- -5'
30220 3' -50 NC_006273.1 + 153184 0.7 0.987527
Target:  5'- aCCACCGUCGUCugaugcauccacGGCG---GCUcCGCCu -3'
miRNA:   3'- -GGUGGUAGUAG------------UCGCaauUGAcGCGG- -5'
30220 3' -50 NC_006273.1 + 1707 0.7 0.987527
Target:  5'- gCGCCGagGaggcgacggcgcUCGGaCGggAGCUGCGCCg -3'
miRNA:   3'- gGUGGUagU------------AGUC-GCaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 233635 0.7 0.988988
Target:  5'- gCACCAgcaGUCGGCGUcGAagucgcUUGCGCUg -3'
miRNA:   3'- gGUGGUag-UAGUCGCAaUU------GACGCGG- -5'
30220 3' -50 NC_006273.1 + 85146 0.7 0.990312
Target:  5'- gCCACCcgCuuagCAGCGUg--UUGCGCg -3'
miRNA:   3'- -GGUGGuaGua--GUCGCAauuGACGCGg -5'
30220 3' -50 NC_006273.1 + 198643 0.7 0.990312
Target:  5'- cCCgACCAUCG--GGCcg-AGCUGUGCCg -3'
miRNA:   3'- -GG-UGGUAGUagUCGcaaUUGACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.