miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 111911 0.69 0.991162
Target:  5'- gCCGCgCAUCAcaCGGCGUUAcacgacugucuggcGCUGCaucuGCCa -3'
miRNA:   3'- -GGUG-GUAGUa-GUCGCAAU--------------UGACG----CGG- -5'
30220 3' -50 NC_006273.1 + 70694 0.69 0.991508
Target:  5'- aCACCGUUGUacGCGU--GCUGCGaCCg -3'
miRNA:   3'- gGUGGUAGUAguCGCAauUGACGC-GG- -5'
30220 3' -50 NC_006273.1 + 108771 0.69 0.991508
Target:  5'- cCCACCAUCugcCGGCGUUGA--GCGaCg -3'
miRNA:   3'- -GGUGGUAGua-GUCGCAAUUgaCGCgG- -5'
30220 3' -50 NC_006273.1 + 152966 0.69 0.991508
Target:  5'- uUCACCAUCAUCcuCGUggccaUAGCUGUaGUCa -3'
miRNA:   3'- -GGUGGUAGUAGucGCA-----AUUGACG-CGG- -5'
30220 3' -50 NC_006273.1 + 41489 0.69 0.991953
Target:  5'- -gGCCGUggaaggauugacaggCGUCGGCGUgaggaUGGCaGCGCCg -3'
miRNA:   3'- ggUGGUA---------------GUAGUCGCA-----AUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 189888 0.69 0.992584
Target:  5'- aCCGCCGggCAUCGcCGUcGGCUGCGaCg -3'
miRNA:   3'- -GGUGGUa-GUAGUcGCAaUUGACGCgG- -5'
30220 3' -50 NC_006273.1 + 25168 0.69 0.992584
Target:  5'- aCUACCGUCGUCcgacGCGaUGACguuaaCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGu---CGCaAUUGac---GCGG- -5'
30220 3' -50 NC_006273.1 + 196036 0.69 0.992584
Target:  5'- gCCGCCucGUCGUCGuccaucgugccGCGg-AACUGCGCg -3'
miRNA:   3'- -GGUGG--UAGUAGU-----------CGCaaUUGACGCGg -5'
30220 3' -50 NC_006273.1 + 166627 0.69 0.992584
Target:  5'- aCCGCCuggaccauGUCGacccgCGGCGUgGAC-GCGCCg -3'
miRNA:   3'- -GGUGG--------UAGUa----GUCGCAaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 38749 0.69 0.993457
Target:  5'- gCCACCGUCGUgccggcccaccgcCGGCGc-AGCUcccguccgaGCGCCg -3'
miRNA:   3'- -GGUGGUAGUA-------------GUCGCaaUUGA---------CGCGG- -5'
30220 3' -50 NC_006273.1 + 233641 0.69 0.993457
Target:  5'- gCCACCGUCGUgccggcccaccgcCGGCGc-AGCUcccguccgaGCGCCg -3'
miRNA:   3'- -GGUGGUAGUA-------------GUCGCaaUUGA---------CGCGG- -5'
30220 3' -50 NC_006273.1 + 75926 0.69 0.993549
Target:  5'- gCCAUgGUCAUgGGCGaaGACacgGUGCCu -3'
miRNA:   3'- -GGUGgUAGUAgUCGCaaUUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 1802 0.69 0.993549
Target:  5'- gCCGCCAaccugUCGUCAccuuacUGUUGGC-GCGCCa -3'
miRNA:   3'- -GGUGGU-----AGUAGUc-----GCAAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 118172 0.69 0.993549
Target:  5'- gCCGCCggCGU-GGCGgccUGACUGCGgCu -3'
miRNA:   3'- -GGUGGuaGUAgUCGCa--AUUGACGCgG- -5'
30220 3' -50 NC_006273.1 + 68865 0.69 0.993549
Target:  5'- aCCACCGUUAcCAGUaccaccGCUGcCGCCg -3'
miRNA:   3'- -GGUGGUAGUaGUCGcaau--UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 119341 0.69 0.993549
Target:  5'- -gGCC-UCAUCuguaccGCG--AACUGCGCCa -3'
miRNA:   3'- ggUGGuAGUAGu-----CGCaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 73733 0.69 0.99364
Target:  5'- gCCGCCAUgGguggCGGCGgcGGCcgaggcccggcagcgGCGCCg -3'
miRNA:   3'- -GGUGGUAgUa---GUCGCaaUUGa--------------CGCGG- -5'
30220 3' -50 NC_006273.1 + 44219 0.69 0.994329
Target:  5'- -aACCuUCGUCAGCGUguuACUcaucuccuucgugGCGCUa -3'
miRNA:   3'- ggUGGuAGUAGUCGCAau-UGA-------------CGCGG- -5'
30220 3' -50 NC_006273.1 + 37860 0.69 0.994411
Target:  5'- aCCGCCGUgacaCAUCAG-GUccaucuugAGCUGgCGCCg -3'
miRNA:   3'- -GGUGGUA----GUAGUCgCAa-------UUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 134932 0.69 0.994411
Target:  5'- uCCGCCGaCAcCGGCGccgcgUGACgcGCGCCc -3'
miRNA:   3'- -GGUGGUaGUaGUCGCa----AUUGa-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.