Results 21 - 40 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30220 | 3' | -50 | NC_006273.1 | + | 134250 | 0.66 | 0.999537 |
Target: 5'- gCACCAUCA-CGGCGgcGAUUcGaCGCa -3' miRNA: 3'- gGUGGUAGUaGUCGCaaUUGA-C-GCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 197138 | 0.66 | 0.999537 |
Target: 5'- aCCGCCGUCGUugcCGGUccccGUUucCUccgGCGCCg -3' miRNA: 3'- -GGUGGUAGUA---GUCG----CAAuuGA---CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 192018 | 0.66 | 0.999537 |
Target: 5'- aCGCCAUCAggagaugguggaUCAGCGUUGccauCGUCa -3' miRNA: 3'- gGUGGUAGU------------AGUCGCAAUugacGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 196989 | 0.66 | 0.999537 |
Target: 5'- gCCACCG-CAgCGGCGgcGACggacgGCGgCg -3' miRNA: 3'- -GGUGGUaGUaGUCGCaaUUGa----CGCgG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 141724 | 0.66 | 0.999537 |
Target: 5'- gCCGCCAuugcgUCGUCccAGCag-GGC-GCGCCg -3' miRNA: 3'- -GGUGGU-----AGUAG--UCGcaaUUGaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 176145 | 0.66 | 0.999517 |
Target: 5'- gCUGCCAg---CGGCGcccagcagguACUGCGCCu -3' miRNA: 3'- -GGUGGUaguaGUCGCaau-------UGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 58662 | 0.66 | 0.999428 |
Target: 5'- aCGCCGUUcuugaCGGCGUUGugGCUGCuauugggucacaGCCg -3' miRNA: 3'- gGUGGUAGua---GUCGCAAU--UGACG------------CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 176809 | 0.66 | 0.999428 |
Target: 5'- uCCGCUgcaCAUCGGCGUggcUGGCUugcacacgGCGCUc -3' miRNA: 3'- -GGUGGua-GUAGUCGCA---AUUGA--------CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 161935 | 0.66 | 0.999428 |
Target: 5'- gCUACCAUUAUgcagcaCGGCGaggcuucGGCUGgCGCCa -3' miRNA: 3'- -GGUGGUAGUA------GUCGCaa-----UUGAC-GCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 64104 | 0.66 | 0.999428 |
Target: 5'- gCGCCGUCGUUAccGCGgugcAACgcGCGCUa -3' miRNA: 3'- gGUGGUAGUAGU--CGCaa--UUGa-CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 213056 | 0.66 | 0.999428 |
Target: 5'- aCCGaCGUCGgagucgCGGCGUUcgUUGgCGCCg -3' miRNA: 3'- -GGUgGUAGUa-----GUCGCAAuuGAC-GCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 131111 | 0.66 | 0.999428 |
Target: 5'- -aGCCGUg--CAGCGUUAc--GCGCCg -3' miRNA: 3'- ggUGGUAguaGUCGCAAUugaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 34102 | 0.66 | 0.999428 |
Target: 5'- aCCGCCGUCGUC-GCGcccgu--CGCCg -3' miRNA: 3'- -GGUGGUAGUAGuCGCaauugacGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 43325 | 0.66 | 0.999428 |
Target: 5'- -aAgCGUCGUC-GCcccgGACUGCGCCc -3' miRNA: 3'- ggUgGUAGUAGuCGcaa-UUGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 68982 | 0.66 | 0.999428 |
Target: 5'- cCCACCAcgguuuccUCgGUCAGCaaucUGACguccaGCGCCa -3' miRNA: 3'- -GGUGGU--------AG-UAGUCGca--AUUGa----CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 169264 | 0.66 | 0.999339 |
Target: 5'- aCCACUugcgucaauaugacgAUCAuaaaggcUCGGUGaucGCUGCGCCu -3' miRNA: 3'- -GGUGG---------------UAGU-------AGUCGCaauUGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 195894 | 0.66 | 0.999339 |
Target: 5'- gCGaCGUCAaCAGCGggcacuggugcgaguGCUGCGCCu -3' miRNA: 3'- gGUgGUAGUaGUCGCaau------------UGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 1001 | 0.66 | 0.999339 |
Target: 5'- gCGaCGUCAaCAGCGggcacuggugcgaguGCUGCGCCu -3' miRNA: 3'- gGUgGUAGUaGUCGCaau------------UGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 228572 | 0.66 | 0.999297 |
Target: 5'- uCCACa--CAUCAGC--UGAUUGUGCUg -3' miRNA: 3'- -GGUGguaGUAGUCGcaAUUGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 22275 | 0.66 | 0.999297 |
Target: 5'- uCCGCCGUCGgu-GCGcucauCUGCGgCa -3' miRNA: 3'- -GGUGGUAGUaguCGCaauu-GACGCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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