miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 42271 0.67 0.998956
Target:  5'- aCCGCCGUCGUUAccGCcGgaGACccGCGCUc -3'
miRNA:   3'- -GGUGGUAGUAGU--CG-CaaUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 206137 0.67 0.998956
Target:  5'- gCC-CCAaaggaCGUCAGCaccGUUGACUGUgacGCCa -3'
miRNA:   3'- -GGuGGUa----GUAGUCG---CAAUUGACG---CGG- -5'
30220 3' -50 NC_006273.1 + 152360 0.67 0.998956
Target:  5'- -gACCAUCAaccaaacCAGCGUcaagguGCUGCGUg -3'
miRNA:   3'- ggUGGUAGUa------GUCGCAau----UGACGCGg -5'
30220 3' -50 NC_006273.1 + 41535 0.67 0.998956
Target:  5'- gCGCCAg---CAGgaaCGUUAACUccgGCGCCg -3'
miRNA:   3'- gGUGGUaguaGUC---GCAAUUGA---CGCGG- -5'
30220 3' -50 NC_006273.1 + 45711 0.67 0.998738
Target:  5'- uCCAuCCGucUCAUCGGacac--CUGCGCCa -3'
miRNA:   3'- -GGU-GGU--AGUAGUCgcaauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 163695 0.67 0.998738
Target:  5'- aCCGCCugccaCGUCGGCGgccacAUUGUGCa -3'
miRNA:   3'- -GGUGGua---GUAGUCGCaau--UGACGCGg -5'
30220 3' -50 NC_006273.1 + 158843 0.67 0.998738
Target:  5'- gCGCCA-CGUCcuCGUgcGCcGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGucGCAauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 187277 0.67 0.998738
Target:  5'- gUACCAUgGcuaCGGUGgugAACUGCGUCg -3'
miRNA:   3'- gGUGGUAgUa--GUCGCaa-UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 40346 0.67 0.998738
Target:  5'- uCC-CCGUCGagCGGCG-UGAUUGCaaaGCCg -3'
miRNA:   3'- -GGuGGUAGUa-GUCGCaAUUGACG---CGG- -5'
30220 3' -50 NC_006273.1 + 213485 0.67 0.998738
Target:  5'- gUCACCGUCAaCAGCGUcguc-GCGUg -3'
miRNA:   3'- -GGUGGUAGUaGUCGCAauugaCGCGg -5'
30220 3' -50 NC_006273.1 + 117282 0.67 0.998738
Target:  5'- aCCGCCAUCuccuguaCAGCcgc--CUGCGCUu -3'
miRNA:   3'- -GGUGGUAGua-----GUCGcaauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 132286 0.67 0.998738
Target:  5'- cCCAaCCucCGUCAGCGUUGACgGCa-- -3'
miRNA:   3'- -GGU-GGuaGUAGUCGCAAUUGaCGcgg -5'
30220 3' -50 NC_006273.1 + 71385 0.67 0.998738
Target:  5'- uCC-CCAUgggcUGUCAGCGUcGGgUGCGCg -3'
miRNA:   3'- -GGuGGUA----GUAGUCGCAaUUgACGCGg -5'
30220 3' -50 NC_006273.1 + 51981 0.67 0.998482
Target:  5'- gCACUAUgG-CAcCGUgccagAACUGCGCCa -3'
miRNA:   3'- gGUGGUAgUaGUcGCAa----UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 189321 0.67 0.998482
Target:  5'- aCCugCggCGUCGGCGggUGGgUG-GCCa -3'
miRNA:   3'- -GGugGuaGUAGUCGCa-AUUgACgCGG- -5'
30220 3' -50 NC_006273.1 + 87078 0.67 0.998482
Target:  5'- gCCGCCG-CGUuucucuugaaCGGCGUgGACUcCGCCa -3'
miRNA:   3'- -GGUGGUaGUA----------GUCGCAaUUGAcGCGG- -5'
30220 3' -50 NC_006273.1 + 229652 0.67 0.998482
Target:  5'- aCgACgaGUCGUCGGCGUcuuccucgGGCgaaGCGCCa -3'
miRNA:   3'- -GgUGg-UAGUAGUCGCAa-------UUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 208214 0.67 0.998482
Target:  5'- -aGCCAUg--CAGCGU--GCgGCGCCu -3'
miRNA:   3'- ggUGGUAguaGUCGCAauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 194851 0.67 0.998482
Target:  5'- aCCGCCcucgGUCcccGUgAGCGgUAGC-GCGCCg -3'
miRNA:   3'- -GGUGG----UAG---UAgUCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 27193 0.67 0.998482
Target:  5'- uCCugCAgcugCAccaCGGCcuuaugUGGCUGCGCCg -3'
miRNA:   3'- -GGugGUa---GUa--GUCGca----AUUGACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.