miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 1001 0.66 0.999339
Target:  5'- gCGaCGUCAaCAGCGggcacuggugcgaguGCUGCGCCu -3'
miRNA:   3'- gGUgGUAGUaGUCGCaau------------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 1707 0.7 0.987527
Target:  5'- gCGCCGagGaggcgacggcgcUCGGaCGggAGCUGCGCCg -3'
miRNA:   3'- gGUGGUagU------------AGUC-GCaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 1715 0.73 0.934305
Target:  5'- uCCGCCG-CggCGGUGgcGACUGgGCCg -3'
miRNA:   3'- -GGUGGUaGuaGUCGCaaUUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 1802 0.69 0.993549
Target:  5'- gCCGCCAaccugUCGUCAccuuacUGUUGGC-GCGCCa -3'
miRNA:   3'- -GGUGGU-----AGUAGUc-----GCAAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 13047 0.67 0.998956
Target:  5'- aCUcCCGUgUAUCGGCGUacAgUGCGCUg -3'
miRNA:   3'- -GGuGGUA-GUAGUCGCAauUgACGCGG- -5'
30220 3' -50 NC_006273.1 + 13763 0.67 0.999141
Target:  5'- gCACCGUCAUCGGC----AC-GUGCUc -3'
miRNA:   3'- gGUGGUAGUAGUCGcaauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 15072 0.68 0.997395
Target:  5'- -aGCCGUCGUUGGUGgugGGCUGUccgugcuaaucugGCCa -3'
miRNA:   3'- ggUGGUAGUAGUCGCaa-UUGACG-------------CGG- -5'
30220 3' -50 NC_006273.1 + 19784 0.68 0.997438
Target:  5'- cUCAUCcUUAUgAGCGU---CUGCGCCu -3'
miRNA:   3'- -GGUGGuAGUAgUCGCAauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 19964 0.67 0.999141
Target:  5'- aCCGCCGUCAUCAcagcaucacGCcGUaucacccgAACUGcCGUCg -3'
miRNA:   3'- -GGUGGUAGUAGU---------CG-CAa-------UUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 21461 0.78 0.760509
Target:  5'- gCCACCGUCGcccUCAGCGUgcucAGCUGguggcucaugcCGCCa -3'
miRNA:   3'- -GGUGGUAGU---AGUCGCAa---UUGAC-----------GCGG- -5'
30220 3' -50 NC_006273.1 + 21929 0.72 0.969915
Target:  5'- gCCGCCggCAUCGG-GUaGACgGCGCUa -3'
miRNA:   3'- -GGUGGuaGUAGUCgCAaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 22275 0.66 0.999297
Target:  5'- uCCGCCGUCGgu-GCGcucauCUGCGgCa -3'
miRNA:   3'- -GGUGGUAGUaguCGCaauu-GACGCgG- -5'
30220 3' -50 NC_006273.1 + 23351 0.66 0.999628
Target:  5'- cCC-CCAgcgacugUGUCAGCG---GCUGCGCa -3'
miRNA:   3'- -GGuGGUa------GUAGUCGCaauUGACGCGg -5'
30220 3' -50 NC_006273.1 + 25168 0.69 0.992584
Target:  5'- aCUACCGUCGUCcgacGCGaUGACguuaaCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGu---CGCaAUUGac---GCGG- -5'
30220 3' -50 NC_006273.1 + 26330 0.71 0.979706
Target:  5'- aCCGCgAUCGUCAuGCGUgucuacggauuGCUGaCGCUg -3'
miRNA:   3'- -GGUGgUAGUAGU-CGCAau---------UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 27193 0.67 0.998482
Target:  5'- uCCugCAgcugCAccaCGGCcuuaugUGGCUGCGCCg -3'
miRNA:   3'- -GGugGUa---GUa--GUCGca----AUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 27663 0.76 0.864734
Target:  5'- aCCGuguuCCAUCAUCAGCGUauucuACUcuacggcuacgGCGCCa -3'
miRNA:   3'- -GGU----GGUAGUAGUCGCAau---UGA-----------CGCGG- -5'
30220 3' -50 NC_006273.1 + 28685 0.68 0.996672
Target:  5'- cUCACCGUCAaauugcuacacggaCGGCGaccuGCUGCGCa -3'
miRNA:   3'- -GGUGGUAGUa-------------GUCGCaau-UGACGCGg -5'
30220 3' -50 NC_006273.1 + 31457 0.8 0.660393
Target:  5'- gCCGCCAUgA--GGCGgUGGCUGCGCCu -3'
miRNA:   3'- -GGUGGUAgUagUCGCaAUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 31647 0.68 0.995855
Target:  5'- gCACCAU--UC-GCGU--GCUGCGCUg -3'
miRNA:   3'- gGUGGUAguAGuCGCAauUGACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.