miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 32675 0.68 0.996453
Target:  5'- cUCACCGUCA-CGGUGa-AACguaGCGCCc -3'
miRNA:   3'- -GGUGGUAGUaGUCGCaaUUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 33417 0.66 0.999703
Target:  5'- aCCGCCucgggCGUCGGCG---GC-GCGCg -3'
miRNA:   3'- -GGUGGua---GUAGUCGCaauUGaCGCGg -5'
30220 3' -50 NC_006273.1 + 34102 0.66 0.999428
Target:  5'- aCCGCCGUCGUC-GCGcccgu--CGCCg -3'
miRNA:   3'- -GGUGGUAGUAGuCGCaauugacGCGG- -5'
30220 3' -50 NC_006273.1 + 37860 0.69 0.994411
Target:  5'- aCCGCCGUgacaCAUCAG-GUccaucuugAGCUGgCGCCg -3'
miRNA:   3'- -GGUGGUA----GUAGUCgCAa-------UUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 38084 0.67 0.998151
Target:  5'- gCCGCCGcgcggccUCggCGGCGggcgccGACUcGCGCCc -3'
miRNA:   3'- -GGUGGU-------AGuaGUCGCaa----UUGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 38169 0.68 0.996453
Target:  5'- aCACCGUCucggaCGGCGggacgccgAGCccGCGCCg -3'
miRNA:   3'- gGUGGUAGua---GUCGCaa------UUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 38208 0.67 0.998184
Target:  5'- gCCGCuCAUCcggagaCGGCGgaAACcgcgGCGCCg -3'
miRNA:   3'- -GGUG-GUAGua----GUCGCaaUUGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 38302 0.81 0.588362
Target:  5'- cCCACCAUCAccgUCGGCGccgccGCUGCuGCCg -3'
miRNA:   3'- -GGUGGUAGU---AGUCGCaau--UGACG-CGG- -5'
30220 3' -50 NC_006273.1 + 38342 0.68 0.995855
Target:  5'- gCCACCGUCGUC-GCc---GCUGcCGCUc -3'
miRNA:   3'- -GGUGGUAGUAGuCGcaauUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 38632 0.71 0.975417
Target:  5'- aCgGCCGUCAgCAGCGacgcgggguGCgGCGCCg -3'
miRNA:   3'- -GgUGGUAGUaGUCGCaau------UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 38749 0.69 0.993457
Target:  5'- gCCACCGUCGUgccggcccaccgcCGGCGc-AGCUcccguccgaGCGCCg -3'
miRNA:   3'- -GGUGGUAGUA-------------GUCGCaaUUGA---------CGCGG- -5'
30220 3' -50 NC_006273.1 + 38943 0.67 0.998184
Target:  5'- gCCGCUAggAUCAGCGUguuguuCGCCa -3'
miRNA:   3'- -GGUGGUagUAGUCGCAauugacGCGG- -5'
30220 3' -50 NC_006273.1 + 39118 0.66 0.999628
Target:  5'- uCCACgCGUCccgCGGCGacAGCUGaCGCa -3'
miRNA:   3'- -GGUG-GUAGua-GUCGCaaUUGAC-GCGg -5'
30220 3' -50 NC_006273.1 + 39443 0.68 0.997838
Target:  5'- uUCACCGUCAacguggauUCAcuauGCGUggacgcggAACaGCGCCa -3'
miRNA:   3'- -GGUGGUAGU--------AGU----CGCAa-------UUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 40346 0.67 0.998738
Target:  5'- uCC-CCGUCGagCGGCG-UGAUUGCaaaGCCg -3'
miRNA:   3'- -GGuGGUAGUa-GUCGCaAUUGACG---CGG- -5'
30220 3' -50 NC_006273.1 + 40471 0.69 0.995458
Target:  5'- aCCGCgGgauaCGUCGGCGUggucgaggcggcccGGCUGCuGCCg -3'
miRNA:   3'- -GGUGgUa---GUAGUCGCAa-------------UUGACG-CGG- -5'
30220 3' -50 NC_006273.1 + 41489 0.69 0.991953
Target:  5'- -gGCCGUggaaggauugacaggCGUCGGCGUgaggaUGGCaGCGCCg -3'
miRNA:   3'- ggUGGUA---------------GUAGUCGCA-----AUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 41535 0.67 0.998956
Target:  5'- gCGCCAg---CAGgaaCGUUAACUccgGCGCCg -3'
miRNA:   3'- gGUGGUaguaGUC---GCAAUUGA---CGCGG- -5'
30220 3' -50 NC_006273.1 + 42168 0.73 0.939197
Target:  5'- gCCGCCGcCGcCAGCGgUAGCUGCuCCg -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaAUUGACGcGG- -5'
30220 3' -50 NC_006273.1 + 42271 0.67 0.998956
Target:  5'- aCCGCCGUCGUUAccGCcGgaGACccGCGCUc -3'
miRNA:   3'- -GGUGGUAGUAGU--CG-CaaUUGa-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.