miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 43325 0.66 0.999428
Target:  5'- -aAgCGUCGUC-GCcccgGACUGCGCCc -3'
miRNA:   3'- ggUgGUAGUAGuCGcaa-UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 43373 0.68 0.996397
Target:  5'- uCCACCAUC-UCcugauGGCGUUGucgggccaccaggGCUGCuCCu -3'
miRNA:   3'- -GGUGGUAGuAG-----UCGCAAU-------------UGACGcGG- -5'
30220 3' -50 NC_006273.1 + 44219 0.69 0.994329
Target:  5'- -aACCuUCGUCAGCGUguuACUcaucuccuucgugGCGCUa -3'
miRNA:   3'- ggUGGuAGUAGUCGCAau-UGA-------------CGCGG- -5'
30220 3' -50 NC_006273.1 + 45711 0.67 0.998738
Target:  5'- uCCAuCCGucUCAUCGGacac--CUGCGCCa -3'
miRNA:   3'- -GGU-GGU--AGUAGUCgcaauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 46796 0.7 0.98416
Target:  5'- aCCGgCGUuaagcccgaggaCAUCAGCGUgcACcuggGCGCCg -3'
miRNA:   3'- -GGUgGUA------------GUAGUCGCAauUGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 46984 0.68 0.996453
Target:  5'- aCCACgGUCga-GGCGgugGAUcugUGCGCCg -3'
miRNA:   3'- -GGUGgUAGuagUCGCaa-UUG---ACGCGG- -5'
30220 3' -50 NC_006273.1 + 47678 0.77 0.81565
Target:  5'- aC-CCAUCAUCGGCGUgauGCUcGUGCUg -3'
miRNA:   3'- gGuGGUAGUAGUCGCAau-UGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 48037 0.71 0.980145
Target:  5'- uCCGCCGgaCAU-GGCGgUGACgGCGCCg -3'
miRNA:   3'- -GGUGGUa-GUAgUCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 49667 0.72 0.95638
Target:  5'- -aGCCGUCGaCAGCGUggacGACUGgGCg -3'
miRNA:   3'- ggUGGUAGUaGUCGCAa---UUGACgCGg -5'
30220 3' -50 NC_006273.1 + 51981 0.67 0.998482
Target:  5'- gCACUAUgG-CAcCGUgccagAACUGCGCCa -3'
miRNA:   3'- gGUGGUAgUaGUcGCAa----UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 52817 0.71 0.977874
Target:  5'- cUCACCGUCAauuacgccaugUUGGCGgcgUAACcgGUGCCg -3'
miRNA:   3'- -GGUGGUAGU-----------AGUCGCa--AUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 55510 0.68 0.995855
Target:  5'- aCgACCGUCGUCAGCGccucgUUAccguCU-CGCCa -3'
miRNA:   3'- -GgUGGUAGUAGUCGC-----AAUu---GAcGCGG- -5'
30220 3' -50 NC_006273.1 + 56367 0.8 0.659365
Target:  5'- aCCGCCGUCGUCuccgccGGCGUUuucuccaucgcggGACcGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAG------UCGCAA-------------UUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 57703 0.66 0.999636
Target:  5'- gCGCCAgCGUCGGCGgcuccgagagGCGCg -3'
miRNA:   3'- gGUGGUaGUAGUCGCaauuga----CGCGg -5'
30220 3' -50 NC_006273.1 + 58662 0.66 0.999428
Target:  5'- aCGCCGUUcuugaCGGCGUUGugGCUGCuauugggucacaGCCg -3'
miRNA:   3'- gGUGGUAGua---GUCGCAAU--UGACG------------CGG- -5'
30220 3' -50 NC_006273.1 + 59316 0.68 0.997438
Target:  5'- aCGCUGUucaCAUCGGCGUUAAgUcGCGUUa -3'
miRNA:   3'- gGUGGUA---GUAGUCGCAAUUgA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 61400 0.66 0.999537
Target:  5'- cCCGucuCCAUgCGgaugagCAGCGcgcccGGCUGCGCCu -3'
miRNA:   3'- -GGU---GGUA-GUa-----GUCGCaa---UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 63477 0.76 0.832771
Target:  5'- cCCACUcUUG-CAGCGUUAGCaGCGCCc -3'
miRNA:   3'- -GGUGGuAGUaGUCGCAAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 64025 0.66 0.999628
Target:  5'- gCCACCAUgGgcgCGGCGguuuuggUGGC-GCgGCCu -3'
miRNA:   3'- -GGUGGUAgUa--GUCGCa------AUUGaCG-CGG- -5'
30220 3' -50 NC_006273.1 + 64104 0.66 0.999428
Target:  5'- gCGCCGUCGUUAccGCGgugcAACgcGCGCUa -3'
miRNA:   3'- gGUGGUAGUAGU--CGCaa--UUGa-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.