miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 64216 0.67 0.999141
Target:  5'- gCACCGaCAUC-GCGc--GCUaGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGuCGCaauUGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 64520 0.71 0.972766
Target:  5'- cCCGCCGgcucgaCAUCGGUGUcc-CUGcCGCCg -3'
miRNA:   3'- -GGUGGUa-----GUAGUCGCAauuGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 64977 0.71 0.972766
Target:  5'- gUCACCGUCAaCu-CGUUGGCgcGCGCCg -3'
miRNA:   3'- -GGUGGUAGUaGucGCAAUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 65092 0.66 0.999682
Target:  5'- uCCAUCAggugcugauggugcUCAcgggcuUCGGCGUgcaGCUGuCGCCc -3'
miRNA:   3'- -GGUGGU--------------AGU------AGUCGCAau-UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 65786 0.74 0.929172
Target:  5'- -uGCCGUCaAUCAGCGcucgUGuCUGCGUCg -3'
miRNA:   3'- ggUGGUAG-UAGUCGCa---AUuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 68198 0.69 0.994411
Target:  5'- aCGCCggCcUCcGCGgccGCUGCGCCc -3'
miRNA:   3'- gGUGGuaGuAGuCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 68832 0.68 0.996979
Target:  5'- gCCGCgCGUCAUCaaaaAGUGcaggAACUGUGCa -3'
miRNA:   3'- -GGUG-GUAGUAG----UCGCaa--UUGACGCGg -5'
30220 3' -50 NC_006273.1 + 68865 0.69 0.993549
Target:  5'- aCCACCGUUAcCAGUaccaccGCUGcCGCCg -3'
miRNA:   3'- -GGUGGUAGUaGUCGcaau--UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 68982 0.66 0.999428
Target:  5'- cCCACCAcgguuuccUCgGUCAGCaaucUGACguccaGCGCCa -3'
miRNA:   3'- -GGUGGU--------AG-UAGUCGca--AUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 70694 0.69 0.991508
Target:  5'- aCACCGUUGUacGCGU--GCUGCGaCCg -3'
miRNA:   3'- gGUGGUAGUAguCGCAauUGACGC-GG- -5'
30220 3' -50 NC_006273.1 + 70937 0.66 0.999537
Target:  5'- aCAUCGUCAUCgAGCG---GCcGCgGCCg -3'
miRNA:   3'- gGUGGUAGUAG-UCGCaauUGaCG-CGG- -5'
30220 3' -50 NC_006273.1 + 71064 0.66 0.999703
Target:  5'- gCGCCGggagCAUCuGGUGUUcauGCUgugggGCGCCg -3'
miRNA:   3'- gGUGGUa---GUAG-UCGCAAu--UGA-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 71385 0.67 0.998738
Target:  5'- uCC-CCAUgggcUGUCAGCGUcGGgUGCGCg -3'
miRNA:   3'- -GGuGGUA----GUAGUCGCAaUUgACGCGg -5'
30220 3' -50 NC_006273.1 + 73045 0.67 0.999124
Target:  5'- aCCACCAcCggCAGaCGagGACgauuuuuUGCGCCg -3'
miRNA:   3'- -GGUGGUaGuaGUC-GCaaUUG-------ACGCGG- -5'
30220 3' -50 NC_006273.1 + 73123 0.8 0.650106
Target:  5'- aCCGCCGaCGUCuGCGccgcaAACUGCGCCg -3'
miRNA:   3'- -GGUGGUaGUAGuCGCaa---UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 73649 0.66 0.999297
Target:  5'- uCCuCCucuUCAUCAGCGUcucccucGCuUGCGCa -3'
miRNA:   3'- -GGuGGu--AGUAGUCGCAau-----UG-ACGCGg -5'
30220 3' -50 NC_006273.1 + 73733 0.69 0.99364
Target:  5'- gCCGCCAUgGguggCGGCGgcGGCcgaggcccggcagcgGCGCCg -3'
miRNA:   3'- -GGUGGUAgUa---GUCGCaaUUGa--------------CGCGG- -5'
30220 3' -50 NC_006273.1 + 75619 0.79 0.69413
Target:  5'- gCGCCAUCAUCAGCaucugccucaaacagGACUGCGaCCa -3'
miRNA:   3'- gGUGGUAGUAGUCGcaa------------UUGACGC-GG- -5'
30220 3' -50 NC_006273.1 + 75926 0.69 0.993549
Target:  5'- gCCAUgGUCAUgGGCGaaGACacgGUGCCu -3'
miRNA:   3'- -GGUGgUAGUAgUCGCaaUUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 77152 0.71 0.980145
Target:  5'- aCCGCCGUCGcCGGCc--GACgcGCGCCc -3'
miRNA:   3'- -GGUGGUAGUaGUCGcaaUUGa-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.