miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 77718 0.79 0.721321
Target:  5'- aCCACguCGUUAUCAGCGU--GCUGUGUCa -3'
miRNA:   3'- -GGUG--GUAGUAGUCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 78419 0.74 0.918178
Target:  5'- cCCGCCGcCGUCAGCGUcguCguccGUGCCa -3'
miRNA:   3'- -GGUGGUaGUAGUCGCAauuGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 78491 0.68 0.996223
Target:  5'- aUCACCGUUGUCGGaggaacccuGCgGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGUCgcaau----UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 79909 0.66 0.999703
Target:  5'- -aGCCcUCG--AGCGUguacguCUGCGCCg -3'
miRNA:   3'- ggUGGuAGUagUCGCAauu---GACGCGG- -5'
30220 3' -50 NC_006273.1 + 85146 0.7 0.990312
Target:  5'- gCCACCcgCuuagCAGCGUg--UUGCGCg -3'
miRNA:   3'- -GGUGGuaGua--GUCGCAauuGACGCGg -5'
30220 3' -50 NC_006273.1 + 86524 0.75 0.872209
Target:  5'- gUCGCCGUCGUCAcGCGgcAGCgGCGgCa -3'
miRNA:   3'- -GGUGGUAGUAGU-CGCaaUUGaCGCgG- -5'
30220 3' -50 NC_006273.1 + 87078 0.67 0.998482
Target:  5'- gCCGCCG-CGUuucucuugaaCGGCGUgGACUcCGCCa -3'
miRNA:   3'- -GGUGGUaGUA----------GUCGCAaUUGAcGCGG- -5'
30220 3' -50 NC_006273.1 + 89587 0.68 0.996453
Target:  5'- -gGCCGUCGUgGGUGgccucgcggUGGCUGcCGCUa -3'
miRNA:   3'- ggUGGUAGUAgUCGCa--------AUUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 92591 0.69 0.995177
Target:  5'- cCCACCAgCGaCGGCGgcuGCUGUugcucGCCa -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaauUGACG-----CGG- -5'
30220 3' -50 NC_006273.1 + 94712 0.74 0.923796
Target:  5'- cCCGCCGUCGUCgccugcGGCGUUGGC-GCagggaauucguaGCCg -3'
miRNA:   3'- -GGUGGUAGUAG------UCGCAAUUGaCG------------CGG- -5'
30220 3' -50 NC_006273.1 + 95236 0.67 0.998956
Target:  5'- cCCACCAggcugUGGCGUguguGCUG-GCCg -3'
miRNA:   3'- -GGUGGUagua-GUCGCAau--UGACgCGG- -5'
30220 3' -50 NC_006273.1 + 95505 0.73 0.943847
Target:  5'- -gACCGagaaAUCGGCGgccggaGACUGCGCCg -3'
miRNA:   3'- ggUGGUag--UAGUCGCaa----UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 95946 0.67 0.999141
Target:  5'- uUCACCAaug-UGGCGgc-GCUGUGCCg -3'
miRNA:   3'- -GGUGGUaguaGUCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 96995 0.75 0.879466
Target:  5'- -gGCCGUCuccCAGUGUgacCUGCGCCg -3'
miRNA:   3'- ggUGGUAGua-GUCGCAauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 98496 0.71 0.975417
Target:  5'- gUCAUCGUagcUCAGCucgcGACUGCGCCa -3'
miRNA:   3'- -GGUGGUAgu-AGUCGcaa-UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 99471 0.74 0.906218
Target:  5'- -uGCuCAUCGUCAGCG--AACcGCGCCu -3'
miRNA:   3'- ggUG-GUAGUAGUCGCaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 100921 0.69 0.995104
Target:  5'- cCCACCuUCAUCAGCcucAACucgcaggUGCGCa -3'
miRNA:   3'- -GGUGGuAGUAGUCGcaaUUG-------ACGCGg -5'
30220 3' -50 NC_006273.1 + 101788 0.68 0.996979
Target:  5'- gCCACCAgggcCGGCG---ACUGaCGCCg -3'
miRNA:   3'- -GGUGGUaguaGUCGCaauUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 102872 0.67 0.999141
Target:  5'- aCCACguCGUCuUCGGCGUcgGGCgGCGgCg -3'
miRNA:   3'- -GGUG--GUAGuAGUCGCAa-UUGaCGCgG- -5'
30220 3' -50 NC_006273.1 + 103732 0.71 0.977874
Target:  5'- gCGCCG-CGUCAGCGUcguaAGCcaccacGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGUCGCAa---UUGa-----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.