miRNA display CGI


Results 101 - 120 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 108771 0.69 0.991508
Target:  5'- cCCACCAUCugcCGGCGUUGA--GCGaCg -3'
miRNA:   3'- -GGUGGUAGua-GUCGCAAUUgaCGCgG- -5'
30220 3' -50 NC_006273.1 + 111911 0.69 0.991162
Target:  5'- gCCGCgCAUCAcaCGGCGUUAcacgacugucuggcGCUGCaucuGCCa -3'
miRNA:   3'- -GGUG-GUAGUa-GUCGCAAU--------------UGACG----CGG- -5'
30220 3' -50 NC_006273.1 + 112435 0.66 0.99962
Target:  5'- aCCACCguGUCGUCcGCGUUcgucguccccaggGACcgGCGUg -3'
miRNA:   3'- -GGUGG--UAGUAGuCGCAA-------------UUGa-CGCGg -5'
30220 3' -50 NC_006273.1 + 112559 0.68 0.997838
Target:  5'- gUCGCCG-CGUCAGCGgccGCcgGUGCUu -3'
miRNA:   3'- -GGUGGUaGUAGUCGCaauUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 114439 0.67 0.998184
Target:  5'- aCGCCccgCGUCAcCGgcGGCgGCGCCa -3'
miRNA:   3'- gGUGGua-GUAGUcGCaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 115542 0.68 0.996979
Target:  5'- gCGCCAUCAUCcgccgcacGGCucaccACUGgGCCg -3'
miRNA:   3'- gGUGGUAGUAG--------UCGcaau-UGACgCGG- -5'
30220 3' -50 NC_006273.1 + 117282 0.67 0.998738
Target:  5'- aCCGCCAUCuccuguaCAGCcgc--CUGCGCUu -3'
miRNA:   3'- -GGUGGUAGua-----GUCGcaauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 117698 0.73 0.94826
Target:  5'- cCCAUUAUCccgggugggGUCGGCGUUAcgaGCccGCGCCg -3'
miRNA:   3'- -GGUGGUAG---------UAGUCGCAAU---UGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 117767 0.66 0.999628
Target:  5'- gCCACCAUCAcCGGCcuaUUAcCgucgGCGCg -3'
miRNA:   3'- -GGUGGUAGUaGUCGc--AAUuGa---CGCGg -5'
30220 3' -50 NC_006273.1 + 118172 0.69 0.993549
Target:  5'- gCCGCCggCGU-GGCGgccUGACUGCGgCu -3'
miRNA:   3'- -GGUGGuaGUAgUCGCa--AUUGACGCgG- -5'
30220 3' -50 NC_006273.1 + 118442 0.7 0.987061
Target:  5'- cCCGCCcaaagacaugguagAUCugaAUCGGCGgauuuuugUGGCUGCGCUc -3'
miRNA:   3'- -GGUGG--------------UAG---UAGUCGCa-------AUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 119341 0.69 0.993549
Target:  5'- -gGCC-UCAUCuguaccGCG--AACUGCGCCa -3'
miRNA:   3'- ggUGGuAGUAGu-----CGCaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 119717 0.78 0.760509
Target:  5'- uCUACCAgCGUCAGCGggAug-GCGCCg -3'
miRNA:   3'- -GGUGGUaGUAGUCGCaaUugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 122045 0.71 0.980145
Target:  5'- aCACCAggAUCAGCGagGGCUG-GCUc -3'
miRNA:   3'- gGUGGUagUAGUCGCaaUUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 122517 0.72 0.966857
Target:  5'- aCACCGUCAcguuuUCcaaAGCGUUGACcaCGCCg -3'
miRNA:   3'- gGUGGUAGU-----AG---UCGCAAUUGacGCGG- -5'
30220 3' -50 NC_006273.1 + 124114 0.68 0.9978
Target:  5'- gCGgCGUCGacagagcUCGGCGUUGGCgGCGgCa -3'
miRNA:   3'- gGUgGUAGU-------AGUCGCAAUUGaCGCgG- -5'
30220 3' -50 NC_006273.1 + 124984 0.74 0.923796
Target:  5'- gCAUCAaCGUCAGCGUcauAUUGCGCa -3'
miRNA:   3'- gGUGGUaGUAGUCGCAau-UGACGCGg -5'
30220 3' -50 NC_006273.1 + 125981 0.68 0.997438
Target:  5'- gCACCGUgG-CGGCGgc-AUUGCGCUc -3'
miRNA:   3'- gGUGGUAgUaGUCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 126852 0.7 0.987527
Target:  5'- gCCugCAg---CAGCGgcgUAugUGCGUCg -3'
miRNA:   3'- -GGugGUaguaGUCGCa--AUugACGCGG- -5'
30220 3' -50 NC_006273.1 + 126891 0.68 0.997982
Target:  5'- uCCACCAgcUCgGUCAGCaucucgccuacggcUUGACguUGCGCCg -3'
miRNA:   3'- -GGUGGU--AG-UAGUCGc-------------AAUUG--ACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.