miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 205805 1.06 0.028657
Target:  5'- gCCACCAUCAUCAGCGUauACUGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGUCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 204522 0.68 0.997438
Target:  5'- aUCGCCcUCggCAGCGgacGGCUcaccugGCGCCa -3'
miRNA:   3'- -GGUGGuAGuaGUCGCaa-UUGA------CGCGG- -5'
30220 3' -50 NC_006273.1 + 204318 0.68 0.996979
Target:  5'- gCC-CCGUCAUuuucCAGCug-GGgUGCGCCg -3'
miRNA:   3'- -GGuGGUAGUA----GUCGcaaUUgACGCGG- -5'
30220 3' -50 NC_006273.1 + 202570 0.67 0.999141
Target:  5'- gCgGCCGaCggCAGCGU--GCUGUGCUc -3'
miRNA:   3'- -GgUGGUaGuaGUCGCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 202146 0.67 0.999141
Target:  5'- cCCGCCGUCGUCGcCGccccggGGCccucggUGCGCUa -3'
miRNA:   3'- -GGUGGUAGUAGUcGCaa----UUG------ACGCGG- -5'
30220 3' -50 NC_006273.1 + 201891 0.69 0.995177
Target:  5'- cCCgACUA-CcgCAGCGUgucGCUGCGCa -3'
miRNA:   3'- -GG-UGGUaGuaGUCGCAau-UGACGCGg -5'
30220 3' -50 NC_006273.1 + 200387 0.71 0.977874
Target:  5'- aCCGCCGUCGcUCcGCGUc-GCUuCGCCg -3'
miRNA:   3'- -GGUGGUAGU-AGuCGCAauUGAcGCGG- -5'
30220 3' -50 NC_006273.1 + 199972 0.68 0.996453
Target:  5'- aCGCCAUCGUCAGUucaugGUggcAUUGagcaGCCa -3'
miRNA:   3'- gGUGGUAGUAGUCG-----CAau-UGACg---CGG- -5'
30220 3' -50 NC_006273.1 + 199617 0.66 0.999703
Target:  5'- uCgGCC-UCGUCAGUGUguACgaaugcGUGCCg -3'
miRNA:   3'- -GgUGGuAGUAGUCGCAauUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 198643 0.7 0.990312
Target:  5'- cCCgACCAUCG--GGCcg-AGCUGUGCCg -3'
miRNA:   3'- -GG-UGGUAGUagUCGcaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 198581 0.78 0.779449
Target:  5'- aCCACaCGUCGUgagCAGCGUgaccuGCUGcCGCCa -3'
miRNA:   3'- -GGUG-GUAGUA---GUCGCAau---UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 197915 0.66 0.999537
Target:  5'- gCCACCAggUCAUCc-CGUUG--UGCGCg -3'
miRNA:   3'- -GGUGGU--AGUAGucGCAAUugACGCGg -5'
30220 3' -50 NC_006273.1 + 197737 0.73 0.943847
Target:  5'- gCGCCGUCAaCAGCGUgccuuuuGCcGCGCg -3'
miRNA:   3'- gGUGGUAGUaGUCGCAau-----UGaCGCGg -5'
30220 3' -50 NC_006273.1 + 197181 0.66 0.999628
Target:  5'- uCCGCCGUCuccggAUgAGCGgccGCgGCGCg -3'
miRNA:   3'- -GGUGGUAG-----UAgUCGCaauUGaCGCGg -5'
30220 3' -50 NC_006273.1 + 197138 0.66 0.999537
Target:  5'- aCCGCCGUCGUugcCGGUccccGUUucCUccgGCGCCg -3'
miRNA:   3'- -GGUGGUAGUA---GUCG----CAAuuGA---CGCGG- -5'
30220 3' -50 NC_006273.1 + 196989 0.66 0.999537
Target:  5'- gCCACCG-CAgCGGCGgcGACggacgGCGgCg -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaaUUGa----CGCgG- -5'
30220 3' -50 NC_006273.1 + 196600 0.7 0.98592
Target:  5'- gCGCCGagAggcgacggcgcUCGGaCGggAGCUGCGCCg -3'
miRNA:   3'- gGUGGUagU-----------AGUC-GCaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 196036 0.69 0.992584
Target:  5'- gCCGCCucGUCGUCGuccaucgugccGCGg-AACUGCGCg -3'
miRNA:   3'- -GGUGG--UAGUAGU-----------CGCaaUUGACGCGg -5'
30220 3' -50 NC_006273.1 + 195894 0.66 0.999339
Target:  5'- gCGaCGUCAaCAGCGggcacuggugcgaguGCUGCGCCu -3'
miRNA:   3'- gGUgGUAGUaGUCGCaau------------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 194953 0.78 0.740128
Target:  5'- cCCACCGUCGUCuacggccaaaagcAGCGUaucgaaUGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAG-------------UCGCAauug--ACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.