miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 194851 0.67 0.998482
Target:  5'- aCCGCCcucgGUCcccGUgAGCGgUAGC-GCGCCg -3'
miRNA:   3'- -GGUGG----UAG---UAgUCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 194652 0.66 0.999297
Target:  5'- -aGCCGUCAgccUCGGCGUccguuUUGuCGCCc -3'
miRNA:   3'- ggUGGUAGU---AGUCGCAauu--GAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 193809 0.66 0.999696
Target:  5'- aCCACCG-CGUacaAGUucgagcaaccgacGUUGACguucgGCGCCg -3'
miRNA:   3'- -GGUGGUaGUAg--UCG-------------CAAUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 193226 0.68 0.996453
Target:  5'- aCCGCUggCGgcggCGGCGUUAA-UGCuGCCg -3'
miRNA:   3'- -GGUGGuaGUa---GUCGCAAUUgACG-CGG- -5'
30220 3' -50 NC_006273.1 + 192018 0.66 0.999537
Target:  5'- aCGCCAUCAggagaugguggaUCAGCGUUGccauCGUCa -3'
miRNA:   3'- gGUGGUAGU------------AGUCGCAAUugacGCGG- -5'
30220 3' -50 NC_006273.1 + 191770 0.68 0.996672
Target:  5'- aCCAUCAUCGaCGGcCGUUAuaaagccacccggacAC-GCGCCg -3'
miRNA:   3'- -GGUGGUAGUaGUC-GCAAU---------------UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 189888 0.69 0.992584
Target:  5'- aCCGCCGggCAUCGcCGUcGGCUGCGaCg -3'
miRNA:   3'- -GGUGGUa-GUAGUcGCAaUUGACGCgG- -5'
30220 3' -50 NC_006273.1 + 189321 0.67 0.998482
Target:  5'- aCCugCggCGUCGGCGggUGGgUG-GCCa -3'
miRNA:   3'- -GGugGuaGUAGUCGCa-AUUgACgCGG- -5'
30220 3' -50 NC_006273.1 + 188027 0.7 0.98416
Target:  5'- -uGCUAUCGUCgccgguuucgGGCGaUGACaGCGCCg -3'
miRNA:   3'- ggUGGUAGUAG----------UCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 187277 0.67 0.998738
Target:  5'- gUACCAUgGcuaCGGUGgugAACUGCGUCg -3'
miRNA:   3'- gGUGGUAgUa--GUCGCaa-UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 186315 0.68 0.997838
Target:  5'- aCCACCGUU-UCAGCGgccGGCgUGagGCCa -3'
miRNA:   3'- -GGUGGUAGuAGUCGCaa-UUG-ACg-CGG- -5'
30220 3' -50 NC_006273.1 + 186129 0.67 0.999141
Target:  5'- aCCACCAguUguUgGGCGc--GCUGgGCCa -3'
miRNA:   3'- -GGUGGU--AguAgUCGCaauUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 180054 0.67 0.999033
Target:  5'- gCGCCGUCuUCGGCGUgcaucccgauacgcGGCagGCGCa -3'
miRNA:   3'- gGUGGUAGuAGUCGCAa-------------UUGa-CGCGg -5'
30220 3' -50 NC_006273.1 + 179609 0.73 0.934305
Target:  5'- cCCACCGcuacccguacUCAUCGGCGagGGCgucGCGUCu -3'
miRNA:   3'- -GGUGGU----------AGUAGUCGCaaUUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 179407 0.68 0.997874
Target:  5'- aCUugCAgaagcugguucgucgCGUCAGCGgcacgguGCUGCGUCu -3'
miRNA:   3'- -GGugGUa--------------GUAGUCGCaau----UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 179133 0.67 0.998956
Target:  5'- gCCACCGUCccUCAGCGacgucCcGCGCg -3'
miRNA:   3'- -GGUGGUAGu-AGUCGCaauu-GaCGCGg -5'
30220 3' -50 NC_006273.1 + 177242 0.67 0.999141
Target:  5'- cCCACCGUgGU--GCGgaggccGCUGCGCg -3'
miRNA:   3'- -GGUGGUAgUAguCGCaau---UGACGCGg -5'
30220 3' -50 NC_006273.1 + 176809 0.66 0.999428
Target:  5'- uCCGCUgcaCAUCGGCGUggcUGGCUugcacacgGCGCUc -3'
miRNA:   3'- -GGUGGua-GUAGUCGCA---AUUGA--------CGCGG- -5'
30220 3' -50 NC_006273.1 + 176145 0.66 0.999517
Target:  5'- gCUGCCAg---CGGCGcccagcagguACUGCGCCu -3'
miRNA:   3'- -GGUGGUaguaGUCGCaau-------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 171160 0.72 0.960094
Target:  5'- -gGCCAggUCAUCGGCGcUAGC-GCGCg -3'
miRNA:   3'- ggUGGU--AGUAGUCGCaAUUGaCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.