miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 170855 0.82 0.567959
Target:  5'- aCACCGUCGuuacaagcaUCGGcCGUgcGCUGCGCCa -3'
miRNA:   3'- gGUGGUAGU---------AGUC-GCAauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 169264 0.66 0.999339
Target:  5'- aCCACUugcgucaauaugacgAUCAuaaaggcUCGGUGaucGCUGCGCCu -3'
miRNA:   3'- -GGUGG---------------UAGU-------AGUCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 167026 0.69 0.994411
Target:  5'- gCGCCGugcucagcugcUCGUC-GCGUUGucgcaACUGCGUCu -3'
miRNA:   3'- gGUGGU-----------AGUAGuCGCAAU-----UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 166931 0.73 0.952436
Target:  5'- gCGgCAUCGUCuGCGUgaugAGCUGCugGCCc -3'
miRNA:   3'- gGUgGUAGUAGuCGCAa---UUGACG--CGG- -5'
30220 3' -50 NC_006273.1 + 166627 0.69 0.992584
Target:  5'- aCCGCCuggaccauGUCGacccgCGGCGUgGAC-GCGCCg -3'
miRNA:   3'- -GGUGG--------UAGUa----GUCGCAaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 165281 0.77 0.81565
Target:  5'- aUCACCGUCAUcCAGCGcggcGCUGUGUCc -3'
miRNA:   3'- -GGUGGUAGUA-GUCGCaau-UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 164557 0.66 0.999537
Target:  5'- gUACCGg---CGGUGUUGgaGCgGCGCCa -3'
miRNA:   3'- gGUGGUaguaGUCGCAAU--UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 164271 0.68 0.996104
Target:  5'- gCCGCCGUCgGUCgaucagguacucgcaGGUGUgcGCgucgGCGCCc -3'
miRNA:   3'- -GGUGGUAG-UAG---------------UCGCAauUGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 163695 0.67 0.998738
Target:  5'- aCCGCCugccaCGUCGGCGgccacAUUGUGCa -3'
miRNA:   3'- -GGUGGua---GUAGUCGCaau--UGACGCGg -5'
30220 3' -50 NC_006273.1 + 163060 0.71 0.980145
Target:  5'- cCCACCAagaUCGuccucuuugcacUCAGCGccgcGCUGCGCg -3'
miRNA:   3'- -GGUGGU---AGU------------AGUCGCaau-UGACGCGg -5'
30220 3' -50 NC_006273.1 + 162893 0.71 0.972766
Target:  5'- aCCACCAUCAUCAccaccauaacGcCGUgacgGACgugGcCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGU----------C-GCAa---UUGa--C-GCGG- -5'
30220 3' -50 NC_006273.1 + 161947 0.71 0.980145
Target:  5'- gCACCGUCAUCguGGUGgcgAGC-GCGCUc -3'
miRNA:   3'- gGUGGUAGUAG--UCGCaa-UUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 161935 0.66 0.999428
Target:  5'- gCUACCAUUAUgcagcaCGGCGaggcuucGGCUGgCGCCa -3'
miRNA:   3'- -GGUGGUAGUA------GUCGCaa-----UUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 161813 0.77 0.805941
Target:  5'- uCCugCAUCAg-AGCGUUAAUcagacuuucgacgUGCGCCa -3'
miRNA:   3'- -GGugGUAGUagUCGCAAUUG-------------ACGCGG- -5'
30220 3' -50 NC_006273.1 + 161615 0.77 0.824299
Target:  5'- cCCACCAUgGUCGcCGcUGGCgGCGCCg -3'
miRNA:   3'- -GGUGGUAgUAGUcGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 158843 0.67 0.998738
Target:  5'- gCGCCA-CGUCcuCGUgcGCcGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGucGCAauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 153964 0.67 0.998184
Target:  5'- cCCugCAUCAUCuGCGUcGGUU-CGCCc -3'
miRNA:   3'- -GGugGUAGUAGuCGCAaUUGAcGCGG- -5'
30220 3' -50 NC_006273.1 + 153932 0.69 0.994411
Target:  5'- gCGCUAUCGUCAGCau---CUgGUGCCu -3'
miRNA:   3'- gGUGGUAGUAGUCGcaauuGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 153847 0.73 0.952436
Target:  5'- aUCAUCGUCAUCGacgaguGCGgccuuauGCUGCGCUa -3'
miRNA:   3'- -GGUGGUAGUAGU------CGCaau----UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 153625 0.68 0.996453
Target:  5'- -gGCCggCGUCAGCGUUcgcagcccGGCUccGCGCa -3'
miRNA:   3'- ggUGGuaGUAGUCGCAA--------UUGA--CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.