miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 153184 0.7 0.987527
Target:  5'- aCCACCGUCGUCugaugcauccacGGCG---GCUcCGCCu -3'
miRNA:   3'- -GGUGGUAGUAG------------UCGCaauUGAcGCGG- -5'
30220 3' -50 NC_006273.1 + 152966 0.69 0.991508
Target:  5'- uUCACCAUCAUCcuCGUggccaUAGCUGUaGUCa -3'
miRNA:   3'- -GGUGGUAGUAGucGCA-----AUUGACG-CGG- -5'
30220 3' -50 NC_006273.1 + 152439 0.71 0.980145
Target:  5'- gCCGCCA-CGUacaAGCGgaugUGcuugccgcgcaGCUGCGCCu -3'
miRNA:   3'- -GGUGGUaGUAg--UCGCa---AU-----------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 152360 0.67 0.998956
Target:  5'- -gACCAUCAaccaaacCAGCGUcaagguGCUGCGUg -3'
miRNA:   3'- ggUGGUAGUa------GUCGCAau----UGACGCGg -5'
30220 3' -50 NC_006273.1 + 149665 0.74 0.918178
Target:  5'- aCGCCGcCcgCGGCGUUAgguggcuguuGCUGCGCg -3'
miRNA:   3'- gGUGGUaGuaGUCGCAAU----------UGACGCGg -5'
30220 3' -50 NC_006273.1 + 149129 0.69 0.994411
Target:  5'- aUCACCAUCcagCAGCuaaauGUguaucaccAGCUGUGCCg -3'
miRNA:   3'- -GGUGGUAGua-GUCG-----CAa-------UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 147781 0.72 0.966857
Target:  5'- aCCGCCG-CAaCAGCGgcGACggacgGCGUCg -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaaUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 144378 0.76 0.836108
Target:  5'- gCCACCAaguucuacgaggccuUCGUCAGCGgcugucuGCccgGCGCCg -3'
miRNA:   3'- -GGUGGU---------------AGUAGUCGCaau----UGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 144302 0.68 0.997838
Target:  5'- cCUACCgAUCuggCGGCGUUG--UGCGCg -3'
miRNA:   3'- -GGUGG-UAGua-GUCGCAAUugACGCGg -5'
30220 3' -50 NC_006273.1 + 143859 0.71 0.972766
Target:  5'- gCCGCCAUCAUCAuGUGgg----GCGUCu -3'
miRNA:   3'- -GGUGGUAGUAGU-CGCaauugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 141724 0.66 0.999537
Target:  5'- gCCGCCAuugcgUCGUCccAGCag-GGC-GCGCCg -3'
miRNA:   3'- -GGUGGU-----AGUAG--UCGcaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 140993 0.74 0.912318
Target:  5'- gCC-CCAUCGUCAuCcaaGACUGCGCCg -3'
miRNA:   3'- -GGuGGUAGUAGUcGcaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 137195 0.67 0.999141
Target:  5'- gCCGCUcagcgagcucGUCGcCAGCGcgAGCgcucgGCGCCc -3'
miRNA:   3'- -GGUGG----------UAGUaGUCGCaaUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 136697 0.72 0.966857
Target:  5'- aCGCgGUCAUgAGUugGUgcaGCUGCGCCu -3'
miRNA:   3'- gGUGgUAGUAgUCG--CAau-UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 136447 0.74 0.912318
Target:  5'- aUCACCGUCggCGGgGcgGACUGCGUa -3'
miRNA:   3'- -GGUGGUAGuaGUCgCaaUUGACGCGg -5'
30220 3' -50 NC_006273.1 + 134932 0.69 0.994411
Target:  5'- uCCGCCGaCAcCGGCGccgcgUGACgcGCGCCc -3'
miRNA:   3'- -GGUGGUaGUaGUCGCa----AUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 134250 0.66 0.999537
Target:  5'- gCACCAUCA-CGGCGgcGAUUcGaCGCa -3'
miRNA:   3'- gGUGGUAGUaGUCGCaaUUGA-C-GCGg -5'
30220 3' -50 NC_006273.1 + 133415 0.7 0.984883
Target:  5'- gCCGCgCGUCgaggagaacgaccuuGUCAaCGUgguGCUGCGCCg -3'
miRNA:   3'- -GGUG-GUAG---------------UAGUcGCAau-UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 133229 0.67 0.999141
Target:  5'- cUCGCCuAUCAccuguaCGGUGgcGACgGCGCCa -3'
miRNA:   3'- -GGUGG-UAGUa-----GUCGCaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 132286 0.67 0.998738
Target:  5'- cCCAaCCucCGUCAGCGUUGACgGCa-- -3'
miRNA:   3'- -GGU-GGuaGUAGUCGCAAUUGaCGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.