Results 1 - 20 of 232 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30220 | 3' | -50 | NC_006273.1 | + | 117698 | 0.73 | 0.94826 |
Target: 5'- cCCAUUAUCccgggugggGUCGGCGUUAcgaGCccGCGCCg -3' miRNA: 3'- -GGUGGUAG---------UAGUCGCAAU---UGa-CGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 144378 | 0.76 | 0.836108 |
Target: 5'- gCCACCAaguucuacgaggccuUCGUCAGCGgcugucuGCccgGCGCCg -3' miRNA: 3'- -GGUGGU---------------AGUAGUCGCaau----UGa--CGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 136447 | 0.74 | 0.912318 |
Target: 5'- aUCACCGUCggCGGgGcgGACUGCGUa -3' miRNA: 3'- -GGUGGUAGuaGUCgCaaUUGACGCGg -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 140993 | 0.74 | 0.912318 |
Target: 5'- gCC-CCAUCGUCAuCcaaGACUGCGCCg -3' miRNA: 3'- -GGuGGUAGUAGUcGcaaUUGACGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 149665 | 0.74 | 0.918178 |
Target: 5'- aCGCCGcCcgCGGCGUUAgguggcuguuGCUGCGCg -3' miRNA: 3'- gGUGGUaGuaGUCGCAAU----------UGACGCGg -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 78419 | 0.74 | 0.918178 |
Target: 5'- cCCGCCGcCGUCAGCGUcguCguccGUGCCa -3' miRNA: 3'- -GGUGGUaGUAGUCGCAauuGa---CGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 124984 | 0.74 | 0.923796 |
Target: 5'- gCAUCAaCGUCAGCGUcauAUUGCGCa -3' miRNA: 3'- gGUGGUaGUAGUCGCAau-UGACGCGg -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 65786 | 0.74 | 0.929172 |
Target: 5'- -uGCCGUCaAUCAGCGcucgUGuCUGCGUCg -3' miRNA: 3'- ggUGGUAG-UAGUCGCa---AUuGACGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 1715 | 0.73 | 0.934305 |
Target: 5'- uCCGCCG-CggCGGUGgcGACUGgGCCg -3' miRNA: 3'- -GGUGGUaGuaGUCGCaaUUGACgCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 165281 | 0.77 | 0.81565 |
Target: 5'- aUCACCGUCAUcCAGCGcggcGCUGUGUCc -3' miRNA: 3'- -GGUGGUAGUA-GUCGCaau-UGACGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 161813 | 0.77 | 0.805941 |
Target: 5'- uCCugCAUCAg-AGCGUUAAUcagacuuucgacgUGCGCCa -3' miRNA: 3'- -GGugGUAGUagUCGCAAUUG-------------ACGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 230015 | 0.77 | 0.797854 |
Target: 5'- uCC-CCAUCAUCAGCGUcacAACUGaCGUg -3' miRNA: 3'- -GGuGGUAGUAGUCGCAa--UUGAC-GCGg -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 170855 | 0.82 | 0.567959 |
Target: 5'- aCACCGUCGuuacaagcaUCGGcCGUgcGCUGCGCCa -3' miRNA: 3'- gGUGGUAGU---------AGUC-GCAauUGACGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 233195 | 0.81 | 0.588362 |
Target: 5'- cCCACCAUCAccgUCGGCGccgccGCUGCuGCCg -3' miRNA: 3'- -GGUGGUAGU---AGUCGCaau--UGACG-CGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 73123 | 0.8 | 0.650106 |
Target: 5'- aCCGCCGaCGUCuGCGccgcaAACUGCGCCg -3' miRNA: 3'- -GGUGGUaGUAGuCGCaa---UUGACGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 56367 | 0.8 | 0.659365 |
Target: 5'- aCCGCCGUCGUCuccgccGGCGUUuucuccaucgcggGACcGCGCCg -3' miRNA: 3'- -GGUGGUAGUAG------UCGCAA-------------UUGaCGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 75619 | 0.79 | 0.69413 |
Target: 5'- gCGCCAUCAUCAGCaucugccucaaacagGACUGCGaCCa -3' miRNA: 3'- gGUGGUAGUAGUCGcaa------------UUGACGC-GG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 77718 | 0.79 | 0.721321 |
Target: 5'- aCCACguCGUUAUCAGCGU--GCUGUGUCa -3' miRNA: 3'- -GGUG--GUAGUAGUCGCAauUGACGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 119717 | 0.78 | 0.760509 |
Target: 5'- uCUACCAgCGUCAGCGggAug-GCGCCg -3' miRNA: 3'- -GGUGGUaGUAGUCGCaaUugaCGCGG- -5' |
|||||||
30220 | 3' | -50 | NC_006273.1 | + | 198581 | 0.78 | 0.779449 |
Target: 5'- aCCACaCGUCGUgagCAGCGUgaccuGCUGcCGCCa -3' miRNA: 3'- -GGUG-GUAGUA---GUCGCAau---UGAC-GCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home